Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0622 ATGGGAAGAAATGACCTAGAAAAGTTTGAAGCAACCAATAGATTGTTCAGAAAAAACACGAGTAGCGATTCTTCACATATTCTAAAGAAAGGAAATGAACATCCTGCTTGGTTACCTGATGGCTGGAATATGGGGTTCAAAATTCGAAAAAGTGGTATACACAAGGGAGCTAGATATAAGTGCTTCACTGATCCATTGAAAAGATTCAAATTCTACTCCAAACCTGAGGTATTACGGTATCTTGAAACTGTAGATGGCAGCAACTGTACTTTCAACAAGGGGTGCACTGCTAAGCAATCTACAAGCAATCTGTCATCTGCCGCCAAAAGACAGAAACTGAAGCATTCTGCAATCAAACATCAGCTTTTTGCCGGCAAAGAAGTATCTGACGGGGTCTTAGAATTGTCAGGTGCCTGCAGCTCAAAAGAAGGGCAAAATATGAAGGTATCTGCTGAATTTACGGTTTCTCCAGTTTTGACATCTGACTCTGTGGTCAAGATGCATTTGCCCAAGGATTCAGCTGAAAACAGTTCTGAAATTAAACAATCTAATCCAGCTGATATGCAAGAGAAGAATTGTTTTATGAGTGGAGTGGAGAAGGCTGATGAAGAGAACCCTTTCCACCCAAGCATATCCAAAAACGAGAAAAAATTGAATGTACCTCACCAGAATTTGAGACAACTTGCTGGGAAAGCCGACCAGTTAACCAACACTGTGACCCATGAACCGGCTCGTCGAGTTTCAAAGAGAAACTTAAGGAAAAGTGTAAACCCTATAGACATTGACTTGAAAAATAAATCATCTCATAAGATGAATGTTGTCCGAGGAATTCAGTATGGTCAAAAAACATGTGGAGAGTTACTGAACAAAAACAGCAAGTCTGAAGCTGAACTAGTTTTCAAAGATCGACAGTGCCAGCTAGTAACAGAGAAAATAGATGACAAAGAGGTAGAACTTAAGTATTCTCAGTCTCAGGATTCCAGTGCACATAGCCTCGAGGTTGAAATGAAGAACATCACGAGTGAATTACCTGCTAGGTATGTTTCTCATAGGGGTCAAACTTTGGATTCTGAAACTAATGGCGTCAAAGAAGACAAATTGCCTGTCAATCAGAATGGAAAAATCGGGGCATCTAAAATTCATGTTAACTTGAACAAATATGGTAGTAAGAAAGATTGCTGCAATCCACATCGGCGGGCTTCAAAGCGACTTGCTGGATTAGAACCAGAGGTGATGACGAACTCCATAGTCTGCAAAAGAGCTCCTGAATATAAGAGCAGAAGGTCTAAAGGTATGGTCAATGCAGTATTACGGCAAACTGAGGGTGGGCTGGCAGTTGATCTTGCAGATAATGCTTCTGCCTGTATGAATATGCCATTAAATCGAGAGACAGCAAATAAAACATTAAAATCTCCTAAAATTCCACCCATTACCCATGAGCAACCAGAAAAGTATGGACATGAAGAAATAGATTATGAGAAATCAGAACCTCAGCAGTCCCTTGCTTCCCAATATTCTCAGTCTGACCCATGCTTGGAATTTGCAATTAAGACTCTCACTGGCGTGTTACCCGTTGAGGATTTGATTGGTAATGGGCCTAATCTGGTTACGGAAGCTATGCTGTTTGACAGTGCTAAAGAAAGCAGCAGTGACAGAAATGTGCAGGTAAAATCAAAAAAATTGAAGAGCAAGAAGGAGCTTAAATTGCCTCGCCGGTTGTCAAGGAGACTTTCTGGCCATGAGCCTGAGGTAAAGCCTGCTTTAAGAGCTCTAGAATATGCAACTAGGAAATCATGCAAAGATAAATCAACTGCAACTGTTGTTTTGAACAATGGAGTTTCTAAGCTAGGTAGTGCTGGCAAAGAAACAGAGCTTACTCTTGATGCATCTAAAAGTTTGTTGAAATCAAGTGTGCTTGGTGAATCATCGAAAAAGAATGAAAAGTCATATGAAGTCCAAAATTTTCCCAAGTATCAACAACAGAAGCTTGAAGCTGATAGAATTGGTGACAAGAGTTTGGAGGCACAGGGCTGCTTACTGGTTGGGATGGATGCGGAGCATACCCTTCGTGCATCTGACAGTTTGGAAACAAAAGCACTTGAAGAAACATCGAACAATGAAACCCAAACGGTTGAAGAATTGAACGAGAGTGTGAAATTATTTGAAACCCAAACTATTCCCATAGAGCAACAGCAGGAGCTTGAAACCATGATGAGTTCAGAAACACAGCTTGGCTTACCAGTTGGCGAAGAAACTGAGTGTAAACTTCATGCATCCGGCAGTTCAGAAACAAGAGTACTCAAAGACGCATCAAACAAGAGTGTGAAATCACATGAATCTCAAACCGTTGAAGAATTGTTATATGAAGATGAAACTGTTGCCAATGAGCAACAGCAGAAGCTTGAAGCTGAAAAACTCGGTGATGTGATGTCAGAATCACAAACGTGCTTAAACTATGAGCAGTTTTGGTCAGATCCATGCCTAGAATTTGCAATCAAGACCCTAACAGGTACATTGCCAGTGGATGCTGCTGCCAGCATTTTGCCAGTTATGACCCCTGATAAAAATAACCAAGCAGACAAGGAATTGCTTGACGGGGTAGTAAAGAATCGCGAAGAAGAAAGTCGTGATAACTTGAGCCAATCCCAAAATAATAAAGTCATGATGCCTAATTTATTTTTCCAGCCTCCGAAACAAACACAGTTAAGGGCCAGCTCCACTTGTTGCCAAAATAGGGTGTCTTGTAGTGAAGAAGTTGATTCAACCAGGAATATGAGCGAAGGAGAGCCCCTTTGTATGGAAGACTTGAATACAACAAAACCTGTGCATCAACGAATAACTGGAAGCACAGTTATCCATGAAGAGGTATCAAAGGAAATCCCTCAAGTTCTTGATGTTGATGCTGTTCCAGCTGAGCAACCACAACTTGAAACTGAAATCATGAGCCGTGAGAAGCCCGAGGCTCAGTTTCGTTATCCATTTATGGATTCTTGGTCAGACCCAAGTCTGGAATTTGCATTCAAGACTCTTACAGGTGCCATAACTATCGAGGAAAATTTGCCAATTCAAGGATGTTTGGAGGAAACTTCCATATGGAATGGCCAGAGGGACAGTTACTCATCGTTACCGGATTTTGGATCAACGAGTTTTTCTCAAAGTGATATATCATCCTACTACAATATAGAGGAGAGGTCCATACCAGAGCAGCAGCCACAAACGAGCCTTGGCTTGGAGGTTGATCCTCAGAAATACCATTCTCATTGCAATAGGAAAACCCCAAGGTAA 3285 0.4125 MGRNDLEKFEATNRLFRKNTSSDSSHILKKGNEHPAWLPDGWNMGFKIRKSGIHKGARYKCFTDPLKRFKFYSKPEVLRYLETVDGSNCTFNKGCTAKQSTSNLSSAAKRQKLKHSAIKHQLFAGKEVSDGVLELSGACSSKEGQNMKVSAEFTVSPVLTSDSVVKMHLPKDSAENSSEIKQSNPADMQEKNCFMSGVEKADEENPFHPSISKNEKKLNVPHQNLRQLAGKADQLTNTVTHEPARRVSKRNLRKSVNPIDIDLKNKSSHKMNVVRGIQYGQKTCGELLNKNSKSEAELVFKDRQCQLVTEKIDDKEVELKYSQSQDSSAHSLEVEMKNITSELPARYVSHRGQTLDSETNGVKEDKLPVNQNGKIGASKIHVNLNKYGSKKDCCNPHRRASKRLAGLEPEVMTNSIVCKRAPEYKSRRSKGMVNAVLRQTEGGLAVDLADNASACMNMPLNRETANKTLKSPKIPPITHEQPEKYGHEEIDYEKSEPQQSLASQYSQSDPCLEFAIKTLTGVLPVEDLIGNGPNLVTEAMLFDSAKESSSDRNVQVKSKKLKSKKELKLPRRLSRRLSGHEPEVKPALRALEYATRKSCKDKSTATVVLNNGVSKLGSAGKETELTLDASKSLLKSSVLGESSKKNEKSYEVQNFPKYQQQKLEADRIGDKSLEAQGCLLVGMDAEHTLRASDSLETKALEETSNNETQTVEELNESVKLFETQTIPIEQQQELETMMSSETQLGLPVGEETECKLHASGSSETRVLKDASNKSVKSHESQTVEELLYEDETVANEQQQKLEAEKLGDVMSESQTCLNYEQFWSDPCLEFAIKTLTGTLPVDAAASILPVMTPDKNNQADKELLDGVVKNREEESRDNLSQSQNNKVMMPNLFFQPPKQTQLRASSTCCQNRVSCSEEVDSTRNMSEGEPLCMEDLNTTKPVHQRITGSTVIHEEVSKEIPQVLDVDAVPAEQPQLETEIMSREKPEAQFRYPFMDSWSDPSLEFAFKTLTGAITIEENLPIQGCLEETSIWNGQRDSYSSLPDFGSTSFSQSDISSYYNIEERSIPEQQPQTSLGLEVDPQKYHSHCNRKTPR 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0622 1094 MobiDBLite consensus disorder prediction 1064 1094 - -
Lele49g0622 1094 Pfam Methyl-CpG binding domain 34 84 IPR001739 GO:0003677
Lele49g0622 1094 MobiDBLite consensus disorder prediction 758 782 - -
Lele49g0622 1094 MobiDBLite consensus disorder prediction 1064 1079 - -
Lele49g0622 1094 Gene3D - 5 122 - -
Lele49g0622 1094 Coils Coil 697 717 - -
Lele49g0622 1094 MobiDBLite consensus disorder prediction 546 565 - -
Lele49g0622 1094 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 28 96 IPR001739 GO:0003677
Lele49g0622 1094 PANTHER OS04G0193200 PROTEIN 900 1072 IPR038945 -
Lele49g0622 1094 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0622 Lele-ChrLele49 3766382 3771377 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0622 49 3766382 3771377 Lele49g0622 49 3766382 3771377 ECH
Lele49g0622 49 3766382 3771377 Lele51g0640 51 3867578 3874567 hybridization
Lele49g0622 49 3766382 3771377 Lele52g0642 52 4067425 4072480 hybridization