Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05820 ATGGGAAAATCGGGCGAAACCAGTGGTACAAAACGCAATTCTAAACAAGAGACTGCAGAGGAAGCTAATGAGCGTCCTGAATGGTTGCCTGATGGCTGGAATATTGAAGTCCGAACCCGAAAAAGTGGTCCGGCTGTGGGATCTGCATATAAGTGCTACGTTGATCCATTGAATATACATAAATTCTACTCCAAACCTGAGGTACTGCGACATCTTGAAACTACAAAGGACAGCAACGGCTCTTCCAAGAAGAAGAAAGGCACTGACAAGCATTCTACAAGCAAGGAGGAGGAGAAATGTATTGACAAACATTCTCCAAACAAAAAGAAGCAGAAGCGCACTAACAGTAACCAACATTCTTTAAGTAAAGAGGAAGAGAAATTCACTAGCATACACTCTCCAAACAATACTACAGAGAAAGCTAATGAACGTCCTGAATGGTTGCCTGATGGATGGGATATTCAAGTTCAAACCCGAAAAAGTGGTCCGGCCAAGGGATCTACATATAAGTGCTTCATTGATCCATTGAATACGCATAAATTCTACTCCAAACCCGAGGTACTACGACATCTTGAAACTACAAAGGCCAGCAACTGCTCTTCAAAGAAGAAGAAAGGCACTAGCAAGCATTCTCCAAGCAAGGAGGAGGAGAAATGCACTGACAAACATTCTCCAAACAAGGAGGAGAAATGCATTGACAAGCATTCTCTAAACAAAGAGAAGCAGAAACGCACTAACAATAACCAACATTCTCCAAGTGAAGAGGAAGAGAAATGTATTGACATGCATTCTCCAAGCAAGGAGGAAGAAGAATACATCAACATGGATTCTGGAAGCAAGGACGGAGAGAGATTCACTAGCATGCACTCTCCAAACAATGTTGCGGGCGAGAAGTCCGCTGAAGAGGATCTACCCCCAGGATGGATTAAAGAAGCAAAGATTAGGAAGAACAGAAATGGCATAAGGAAAGATTGGTTATATATTGATCCAGCGAGTGGATATGTATTCTATTCCAAGAAGGATGTACTGCGTTATATTGAATCTGGAGATATAAACAAATGTGCTATTAAACCAAGTAGAAGACAAAATCAAGATGAAGACAACTCAACTCCAACACCTGCTGCCAAAAGACAGAAACCCAAGCAGTCTACACCAAGGCAGAAGATTTCTGCCGTCAAAGAACCAGCTGAAAGCTTAGAATTGCCAGATGTTAACAACTTAATGAAAGGGCAAGACGTGAATGTGTCATCTGGAAGGACAGTTGCTCCAGATACCTCAGGTGAATCCTTGAAAGTCGGCCATCGGGGTTCACGGCGACTGGCTGGGGCTGATCCTGTTAAGTTGGCTGACAATGTGATCAATAATCAGACTCCTATAGTTCCAAAAAGAAACTTAAGAAAAAACAGAACCACTCTAGCTGCTGACATGGAAAATAAATCATCTCAGCATCTCAATGGTGTCCCAGAAATTGAGCAACCAAAGGCAATGAATTTGAGAACCACTCTTTCTGAAGATAATAAGCCTGAATCTCGGACCAACTCAAACAAATTTAGTAAGAAGAAAGAGCCCCACATTCCTTGTCGGGCTTCAAAACGATTGGCTGGATCTGAAAGCAAAAGGTCTAAAGAAGTCACAGCTGAATTGCAGCAAGGTGAGGGTGGGCCAGATCATTCACCATTAAATGGAGAGTCACGAAATAAAAGAAGAAAATCTCCTTTAGTCCTACCTGTTGCAGACAATCAACTGGAAACACTTGAAGTGGATGACGAGAAATCAGAACCTCAGCTGTCCTTTGCATTCCACTACTCTTGGTCTGATCCATGCTTGGATTATGCAATCAATACCCTCACGGGTGTGTTACCACCAGTTGATAATTCTGTTGATAATGGACCTGTGTTACCACCAGTTGATAATTCTGTTGATAATGGACCGTGTACAGCCCCTGAAACTGATATTCAAAAACCTACGTTTGACACTGGCACGGGAAGAAGCAAGGACAGTCAAAACAATTCAGTTGATAATGGATCCACTACAGTACATGAAACTGATATTCAAAATCAAAACAATTCAGTTGACAATGGACCCACTACTGTACATGAAACTGATATTCAAAATCAAAACAATTCAGTTGATAATGGACCTAACACTGTACATGAAACTGATATTCAAAAAACATTGATTGACAACGTTACCGGAGGAAGCAAGGATAGTCAAAGCAATAATGTTACAAGAGGCAGGGACAAAAATGCATCAGTGCAGTCAAACAAATCCAAAAGAAAGAAAGAGGTCAAAGTCCCCCCTATGCGGTTGTCAAAGCGACTTGCTGGCATTGAACCCGAGGCCAAACCTTCTGATAAAGCTCTTGAATATTCAAGTAAAAAATCAAGCAAAGAAGAATCCGCTGCAACTGTACTTTTAACTAATGTAGCATCAGACCATCTCCATGCTGGGGAAGAAGCCAAGCTTACTCGTCATGCATCTGACAGTTTGAAAACAGAAATGCTAGAAAAATCATCAAGAAAGAGTGGTAAATCATCTGATGACCAAACTGTTCACAAGGAACAACAATTGGAGAAAGCTGAAGCTGAAAATATTAGTGATGATAGATCAAAGCCAGAGCCCACCTTGCCGTTCAGTGAATCTTGGTCAGACCCATGCCTAGAATTTGCATTCAAGACTCTTACTGGTGCTTTGCCTGATGATTCTGCTGCAGAAATTTTTAAAGTACCGTCTCCTGGTGTTGGTGACGGGGCAAATAATGAGTTGCATGGGAGAGTAACAACCAGCATTAATGGAAAAATTCATGACAATCCAAACCCATCCCCAACCAAGAAAGAGCATAATATGGCTGGCCAGTCTTCAAAGCCACTGCTCGGGCAACCAGAGTTGATGACTAGCTCCACATCTGTCAAAAATATGGATGGAGAGTCTTCAGAGCTTCTGCCTAGGCAACCTGAGTTGAGGACTAGCTCCACATCTGACAAAAATGTGCCTAAGTTTACCAACGGAGAATTTCAGAGTCATGAAGGCAACATAATAAGGAATTTGGAACCTGTGTTGATGACTACCACCGGAGAATCTCATAGTTATGAAAGTGAAATGATAAGGAATTTGTTTGGAGAACCTCCATTTGTTGAAGCTGAAAACACGACCCAACTTCTGGATCATTCTAGAACCAATGCATACTCGCAAATACAAGAAGAGCCATTAAAGAAAAATGACCAGGTGGCTGAGGGTGAATTTGGTACATTGGATCAACCACCGGGTTTTGAAACTGAGCCATTAAAGAAAAATGACCAGGTGGCTGAGGGTGAATTTGGTACATTGGATCAACCACCGGGTTTTGAAACTGAGCCATTAAAGAAAAATGACCAGGTGGCTGAGGGTGAATTTGGTACATTGGATAAACCACCGGGTTTTGAAACTCAAACCTTAAACCATAACAATACTGAATTACAGTTCTGCGAGTCTTTTATGAATACTTGGTCAGACCCATGCCTAGAATTTGCATTTAAGACCCTTACAGGTGTGCTTCCAGTAGAAGAAAATTTAGGAACTCAAGGAGGTAACCAGGAACCTTCCAACTGTCATACTGGAAGAGACGGTATATCAACGTTGCCAGATTTTGGATCTTCCAGTTTTTCACAAAGTGATTTCTCATTTCACTTTGATACAGGAGTTAAGTCCACGCCAGGGCAACCAGGGCAGCAATCATCAGTGAGCTCTTCATTCTCATCTCCGAGCTTGCAAAGTTGTCCCGGAGTTGATCCACAACAACAATATTCCCAGTTCAATAATAATTTTCAGAGAAGATAA 3816 0.4175 MGKSGETSGTKRNSKQETAEEANERPEWLPDGWNIEVRTRKSGPAVGSAYKCYVDPLNIHKFYSKPEVLRHLETTKDSNGSSKKKKGTDKHSTSKEEEKCIDKHSPNKKKQKRTNSNQHSLSKEEEKFTSIHSPNNTTEKANERPEWLPDGWDIQVQTRKSGPAKGSTYKCFIDPLNTHKFYSKPEVLRHLETTKASNCSSKKKKGTSKHSPSKEEEKCTDKHSPNKEEKCIDKHSLNKEKQKRTNNNQHSPSEEEEKCIDMHSPSKEEEEYINMDSGSKDGERFTSMHSPNNVAGEKSAEEDLPPGWIKEAKIRKNRNGIRKDWLYIDPASGYVFYSKKDVLRYIESGDINKCAIKPSRRQNQDEDNSTPTPAAKRQKPKQSTPRQKISAVKEPAESLELPDVNNLMKGQDVNVSSGRTVAPDTSGESLKVGHRGSRRLAGADPVKLADNVINNQTPIVPKRNLRKNRTTLAADMENKSSQHLNGVPEIEQPKAMNLRTTLSEDNKPESRTNSNKFSKKKEPHIPCRASKRLAGSESKRSKEVTAELQQGEGGPDHSPLNGESRNKRRKSPLVLPVADNQLETLEVDDEKSEPQLSFAFHYSWSDPCLDYAINTLTGVLPPVDNSVDNGPVLPPVDNSVDNGPCTAPETDIQKPTFDTGTGRSKDSQNNSVDNGSTTVHETDIQNQNNSVDNGPTTVHETDIQNQNNSVDNGPNTVHETDIQKTLIDNVTGGSKDSQSNNVTRGRDKNASVQSNKSKRKKEVKVPPMRLSKRLAGIEPEAKPSDKALEYSSKKSSKEESAATVLLTNVASDHLHAGEEAKLTRHASDSLKTEMLEKSSRKSGKSSDDQTVHKEQQLEKAEAENISDDRSKPEPTLPFSESWSDPCLEFAFKTLTGALPDDSAAEIFKVPSPGVGDGANNELHGRVTTSINGKIHDNPNPSPTKKEHNMAGQSSKPLLGQPELMTSSTSVKNMDGESSELLPRQPELRTSSTSDKNVPKFTNGEFQSHEGNIIRNLEPVLMTTTGESHSYESEMIRNLFGEPPFVEAENTTQLLDHSRTNAYSQIQEEPLKKNDQVAEGEFGTLDQPPGFETEPLKKNDQVAEGEFGTLDQPPGFETEPLKKNDQVAEGEFGTLDKPPGFETQTLNHNNTELQFCESFMNTWSDPCLEFAFKTLTGVLPVEENLGTQGGNQEPSNCHTGRDGISTLPDFGSSSFSQSDFSFHFDTGVKSTPGQPGQQSSVSSSFSSPSLQSCPGVDPQQQYSQFNNNFQRR 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 929 1004 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 929 975 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 73 170 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 365 389 - -
Vivi5g05820 1271 Pfam Methyl-CpG binding domain 21 77 IPR001739 GO:0003677
Vivi5g05820 1271 Pfam Methyl-CpG binding domain 140 196 IPR001739 GO:0003677
Vivi5g05820 1271 Pfam Methyl-CpG binding domain 301 349 IPR001739 GO:0003677
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 73 105 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 816 882 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 1182 1209 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 280 294 - -
Vivi5g05820 1271 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 19 95 IPR001739 GO:0003677
Vivi5g05820 1271 Gene3D - 130 223 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 1225 1271 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 474 574 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 628 799 - -
Vivi5g05820 1271 SUPERFAMILY DNA-binding domain 300 354 IPR016177 GO:0003677
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 409 424 - -
Vivi5g05820 1271 SUPERFAMILY DNA-binding domain 14 79 IPR016177 GO:0003677
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 13 27 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 1 32 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 193 303 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 652 750 - -
Vivi5g05820 1271 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 294 373 IPR001739 GO:0003677
Vivi5g05820 1271 PANTHER OS04G0193200 PROTEIN 8 99 IPR038945 -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 351 438 - -
Vivi5g05820 1271 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 138 211 IPR001739 GO:0003677
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 775 796 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 504 546 - -
Vivi5g05820 1271 SUPERFAMILY DNA-binding domain 142 200 IPR016177 GO:0003677
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 209 278 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 983 1004 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 816 874 - -
Vivi5g05820 1271 MobiDBLite consensus disorder prediction 1184 1209 - -
Vivi5g05820 1271 Gene3D - 276 396 - -
Vivi5g05820 1271 Gene3D - 3 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05820 Vivi-Chr5 162167705 162180334 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05820 - - vvo:131603609 2391.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05820 5 162167705 162180334 Vivi5g05820 5 162167705 162180334 ECH