Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03474 ATGGGAAAATCGGGCGTTGGAAAATCTGCAGGAACCAGTGGCACAAAACGCAATTCCAAACAAGAGACTGCAGAAGAAGCTAATGAGCGTCCTGAATGGTTGCCTGATGGCTGGAATTTTGAAGTCCGAACCCGAAAAAGTGGTCCGGCTGTGGGAACTGCATATAAGTGCTATGTTGATCCGTTGAATATACATAAATTCTACTCCAAACCTGAGGTACTGCGACATCTTGAAACTACAAAGGACAGCAACGGCTCTTCCAAGAAGAAGAAAGGTACTACTAGCAAGCATACTCCAAGCAAGGAGGAGGAGAAATGTATTGACAAGCATACTCCAAACAAAGAGAAGCAGAAGCGCACTAAAAGTAACCAACATTCTTCAAGTAAAGAGGAAGAGAAATTCACTAGCATACACTCTCCAAACAATACTGCAGAGAAAGCTAGTGAACGTCCTGAATGGTTGCCTGATGGCTGGGATATTAAAGTTCAAACCCGAAAAAGTGGTCCGGCTATGGGATCTTCATATAAGTGCTACATTGATCCATTGAATATTCATAAATTCTACTCCAAACCCGAGGTACTACGACATCTTGAAACTACAAAGGCCAGCAACTGCTCTTCCAAGAAGAAGAAAGGCACTACTAGCAAGCATACTCCAAGCAAGGAGGAGGAGAAATGTATTGACAAGCATACTCCAAACAAGGAGGAGGAGAAATGCATTGACAAGCATTCTCTAAACAAAGAGAAGCAGAAACACACTAACAACAACCAACATTCTCCAAGTAAAGAGGAAGAGAAATGTATTAACATGCATTCTCCAAGCAAGGAGGAAGAAGAACACATCAACATGGATACTGGAAGCAAGGACGGAGAGAAATTCACTAGCATGCACTCTCCAAACAATGTTGCGGGCGAGAAGTCTGCTGAAGAGGATCTACCCCCTGGATGGATTAAAGAAGCAAAGATTAGGAAGAACAGAAATGGCATAAGGAAAGATTGGTTATATATTGATCCGGAGAGTGGATATGTATTCCATTCCAAGAAGGATGTACAGCGTTATCTTGAATCTGGAGATATAGACAAATGTGCTATTAAACCAAGTAGAAGACAAAATCAAGATGAAGACAACTCAACTCCATATCCTGCTGCCAAAAGACAGAAACCCAAGCAGTCTACACCCAGGCAGAAGACTTCTGCTGCCAATGAACCAGCTGAAAGCTTAGAATCACCAGATGTTAACAACTCAATGAAAGGGAAAGATGTGAATGTGTCATCTGGAATGATGGTTTCTCCTGATACCTCAGGTGAATCCTTGAAAGCCGGCTATCGATCTTCACGGCGACTGACTGGGGCTGAACCTGTTAAGTTGGCTGACAATGTGGTCAATAATCAGACTCTAGTTCCAAAAAGAAACTTAAGAAAAAACAGAACCACTCTAGCCGCTGATATGGAAAATAAATCATCTCAGCATCTCAATGGTGTCCCAGAAACTGAGCAACCGAAGCCTGAATCTCGTACCAACTCAAACAAATTTAGTAAGAAGAAAGAGCCCCACATTCCTTGTCGGGCTTCAAAACGATTGGCTGGATCTGAAAGCAAAAAGTCTGAAGAAGTCACAGATGAATTGCAGCAAGGGGAGGGCGGGCCAGATCATCCACCATTAAATTCAGAGTCACGAAATAAAAGAAGAAAATCTCCTTTAGTCCTACCTGCTGCAGACAATCAACTGGAAATGCTTGAAGTGGATGACGAGAATTCAGAACCTCAGCTGTCCTTTGCATTCCACTACTCTTGGTCTGACCCATGCTTGGATTATGCAATCAATTCCCTCACTGGTGTGTTACCACCAGTTGATAATTCTGTTGATAATGGACCGGCTACAGTCCCTGAGACTGATATTCAAAAACCTACGTTTGACGACACAGTCACAGGAAGAAGCAGGGACAGTCAAAACAATTCAGTTGACAATGAACCCACTACTGTACATGAAACTGATATTCAAAATCAAAACAATTCAGTTGATAATGATAATGGACCCACTACTGTACATGAAACTGATGCTCAAAAAACATTGATTGACAACGTTACAAGAAGCAAGGACAGCCAAAGCAATTTGCTTGACAATGTTACAAGAGGCAGGGACAAAAATACACCAGTGCAGTCAAATAAATCCAAGAGAAAGAAAGAGGTCAAAGTCCCCCCTATGCGGTTGTCAAAGCGACTTGCTGGCATTGAACCAGAGGCCAATCCTTCTGATAAAGCTCTTGAATATTCAAGTAAAAAATCAAGCAAAGAAGAACCCACTGCAGCTGCACTTTTAACTAATGGAGCATCAGACCATCTCCATGCTGTGGAAGAAGCCAAGCTTACTCGTCATGCGTCTGACAGTTTGAAAACAGAAATACCTGAAAAATCATCAAGAAAGAGTGCTAAATCATCTAACAGTTTGAAAACAGAAATACCTGAAAAATCATCAAGAAAGAGCGCTAAATCATCTGATGACCAAATTGTTCACAAGGAACAAGCGTCTGACAGTTTGAAAACAGAAATGCCTGAAAAATCATCAAGAAAGAGCGCTAAATCATCTGATGACCAAATTGTTCACAAGGAACAACAATTGGAGAAAGCTGAAGCTGAAAATGTTAGTGATGATAGATCAAAGCCAGAGGTCACCTTGCCATTCAGTGAATCTTGGTCTGACCCATGCCTAGAATTCGCATTCAAGACTCTTACTGGTGCTTTGCCTGTTGATTCTGCTGCAGAGATTTTAGAAGTACCGTCTCCTGGTGTTGGTGACCCGCCAAATAATGAGTTGCACGAGAGAGTAACCAGCATTAATGGAAAAACTCATGACAACGCAGACCCATCTTTAAACAAGAAAGAGCATAATATGGCTGGCCAGTCTTCAGAGCAAGAGCAACTTGGGCAACCTGAGTTGAGGACTAGCCCCACATCTGGCAAAAATATGGACGGCGAGTCTTCAGAGCTTCTGCTTAGGCAACCTGAGTTGAGGACTAGCTCATCTGACAAAAATGTGCCAAAATTTACCAACGGAGAATCTCGTAGTCATGAAGGCAACATAATAAAGAATTTGGAACCTGTGCTGAAGACTAGCTCCACATCTACCACTGGAGAATCTCATAGTTATGAAAGTGAAATGATAAGGAATTTGTTTGGAGAACCTCCGTTTGTTGAAGCTGAAAACACAACCCAACTTCTGGATCATTCTAGAACTAGTGCACACTCGCAAATACAAGAAGAGCCATTAAAGAAAAATGACCAGAAAAATGACCAGGTTGCTGAGGGTGAAATTGAAGCTGAAAACACGACCCAACTTCTGGATCATTCTAGAACTAATGCACACTCGCAAATACAAGAAGAGCCATTAAAGAAAAATGACCAGGTTGCTGAGGGTGAAATTGGAGCGAAGTCCACGCCAGGGCAGCAATCATCAGTGAGCTCTTCATTCCCATCTCAGAGCCTGCAAAGTTGTCCCGGAGTTGATCCACCACAACAATATTCCCAGTTCAATAATAATTTTCAGAAAAGGTAA 3552 0.4212 MGKSGVGKSAGTSGTKRNSKQETAEEANERPEWLPDGWNFEVRTRKSGPAVGTAYKCYVDPLNIHKFYSKPEVLRHLETTKDSNGSSKKKKGTTSKHTPSKEEEKCIDKHTPNKEKQKRTKSNQHSSSKEEEKFTSIHSPNNTAEKASERPEWLPDGWDIKVQTRKSGPAMGSSYKCYIDPLNIHKFYSKPEVLRHLETTKASNCSSKKKKGTTSKHTPSKEEEKCIDKHTPNKEEEKCIDKHSLNKEKQKHTNNNQHSPSKEEEKCINMHSPSKEEEEHINMDTGSKDGEKFTSMHSPNNVAGEKSAEEDLPPGWIKEAKIRKNRNGIRKDWLYIDPESGYVFHSKKDVQRYLESGDIDKCAIKPSRRQNQDEDNSTPYPAAKRQKPKQSTPRQKTSAANEPAESLESPDVNNSMKGKDVNVSSGMMVSPDTSGESLKAGYRSSRRLTGAEPVKLADNVVNNQTLVPKRNLRKNRTTLAADMENKSSQHLNGVPETEQPKPESRTNSNKFSKKKEPHIPCRASKRLAGSESKKSEEVTDELQQGEGGPDHPPLNSESRNKRRKSPLVLPAADNQLEMLEVDDENSEPQLSFAFHYSWSDPCLDYAINSLTGVLPPVDNSVDNGPATVPETDIQKPTFDDTVTGRSRDSQNNSVDNEPTTVHETDIQNQNNSVDNDNGPTTVHETDAQKTLIDNVTRSKDSQSNLLDNVTRGRDKNTPVQSNKSKRKKEVKVPPMRLSKRLAGIEPEANPSDKALEYSSKKSSKEEPTAAALLTNGASDHLHAVEEAKLTRHASDSLKTEIPEKSSRKSAKSSNSLKTEIPEKSSRKSAKSSDDQIVHKEQASDSLKTEMPEKSSRKSAKSSDDQIVHKEQQLEKAEAENVSDDRSKPEVTLPFSESWSDPCLEFAFKTLTGALPVDSAAEILEVPSPGVGDPPNNELHERVTSINGKTHDNADPSLNKKEHNMAGQSSEQEQLGQPELRTSPTSGKNMDGESSELLLRQPELRTSSSDKNVPKFTNGESRSHEGNIIKNLEPVLKTSSTSTTGESHSYESEMIRNLFGEPPFVEAENTTQLLDHSRTSAHSQIQEEPLKKNDQKNDQVAEGEIEAENTTQLLDHSRTNAHSQIQEEPLKKNDQVAEGEIGAKSTPGQQSSVSSSFPSQSLQSCPGVDPPQQYSQFNNNFQKR 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 96 136 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 1120 1137 - -
Vifa6g03474 1183 Pfam Methyl-CpG binding domain 26 82 IPR001739 GO:0003677
Vifa6g03474 1183 Pfam Methyl-CpG binding domain 146 202 IPR001739 GO:0003677
Vifa6g03474 1183 Pfam Methyl-CpG binding domain 309 357 IPR001739 GO:0003677
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 1080 1102 - -
Vifa6g03474 1183 SUPERFAMILY DNA-binding domain 19 93 IPR016177 GO:0003677
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 820 890 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 943 958 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 789 807 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 392 440 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 216 291 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 999 1024 - -
Vifa6g03474 1183 PANTHER OS04G0193200 PROTEIN 13 101 IPR038945 -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 356 372 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 789 895 - -
Vifa6g03474 1183 Coils Coil 859 879 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 507 541 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 1032 1050 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 356 566 - -
Vifa6g03474 1183 Gene3D - 6 133 - -
Vifa6g03474 1183 Gene3D - 281 406 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 961 991 - -
Vifa6g03474 1183 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 24 97 IPR001739 GO:0003677
Vifa6g03474 1183 CDD MBD 312 356 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 199 312 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 924 1183 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 1103 1119 - -
Vifa6g03474 1183 SUPERFAMILY DNA-binding domain 147 206 IPR016177 GO:0003677
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 481 506 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 1143 1183 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 1 41 - -
Vifa6g03474 1183 SUPERFAMILY DNA-binding domain 308 362 IPR016177 GO:0003677
Vifa6g03474 1183 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 144 217 IPR001739 GO:0003677
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 634 717 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 78 157 - -
Vifa6g03474 1183 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 302 381 IPR001739 GO:0003677
Vifa6g03474 1183 Gene3D - 136 230 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 621 768 - -
Vifa6g03474 1183 MobiDBLite consensus disorder prediction 458 472 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03474 - - psat:127107950 1622.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03474 6 1145830057 1145838780 Vifa6g03474 6 1145830057 1145838780 ECH