Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03084 ATGGCGAGACCTAATCAAGAGACGATTGATACATTCATCAGCATCACCGGCGTATCTGAACCAATCGCACTGCAAAAACTCGAGGAGCATGGTGGTAGTCTTAATGACGCTGTAAATGCATATTTTAGCGAAGGAGACAGAAACTTGATGACCAGTTCCGCTGCAGTTCCTCAAGGGGATTTCATGGATATAGATGATCAACATGAGGATGAAATTCATAGACCTCCGTCTCTCTTATCTTTTCCAAGAAATCTCGATCCATTTTCTCTTCTTGATCCTACAAGAAGTATATTTGATACTCATCTCGGTGTAACAAACCAGACGCCCTTTGTTACACATCCAAGAGAGGTAAGGGAAATTCCGATAGAGGTTAAGGATGGTAGTCAATCCACTCCTCAGGCTGGCCATATTCCAATTGTTGAAGATGTCACCGGAACTGTTCATGCCCAAGGTCCAGATATACATGGGAGTGTTGTGATACTTGATGATGACGATGAAAATACTCCACCTGCTCAGACTCATTCTTCACCTGACAGAATTGCAAGACCTAGTGCTCCTAACTTTGAGAATTTACCAGATAGTAGCAATGAGATAGAAGAAGAAATGATTCGTGCAGCCATTGAGGCATCCAAACGGGAGGCTGAGGAAAATTACAGCAATCACGAACTTGGCAGACAAACTGACTTGAGTGAATCTGGGCCTAACCCAAGGCAAACATTTTTAGAGGATCCTGAGCTTGCCCATGCAGTTTCATTGTCCCTGAGGACAGCAGAGCAAGAAAAAGTACGGCGTGTACAAGAAGGTGATGTTGGAGCAGCTACAGCAGGGCCATCTAAGGCACCGGGAGTTGAATTAGGGGAAGTATCTTCAAATGGAAGATTGCAGGCAGGAAGCTTATCCTTTAAAGATGAAGATGAAGATGTAGAGGAAATGCCTTTGGTTAGGAACAGGTCTAGACATGTGTCACTTACCTCCACAGGATCGGGCAAAGAGGCTGAACTTATTGAGTCTAGCACACTGGCAAGCACAGCAGTTGAGGAAAGCAGTAGTCCTCCTCCGGATAATGACAGTTCCTTCCACTCTCATGAATGGGGGGGCATCTCTTCTGTAGAGCATGATGAAGCAGTAATGCTTGAGGCCGCAATGTTTGGTGGGATCCCGGAAGGAAGTAGTTATCGCCATGCTTATGCACCACACGAGTTCATGCAGAATAGGGGTTTCCATCCTCAGCCCGCACCTCTTGCATATCGCCCACCTTCACCATCATTGGAGGCTCAACGCTTGATAAGGGAACAACAGGATGATGAATACCTTGCATCATTACAAGCAGACAGAGAAAAAGAATTGAAGGCCATAGAGGAAGCTGAGGCTGCTCGCGAAGAGGAAAGGCGGAGAGCAGAAGAATCTCACAAGAAATTACAGGAAGAGCGGGAATTGGAAGCACAGTTAGCTGCCAAAGAAGTCTCTCTACCTCCTGAACCATCCTCAGATAATGATAATGCTGTAAACCTGCTGGTAAAAATGCCAGATGGCAGCCGTCGTGGGCGTCGATTCCTAAGATCTGATAAGCTCCAGGCCCTTTTCGACTTCATAGATATTGGTAGACAGGTGAAACCAAGCAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCCTTTGGTGTCGAAGAAAGTGCTGTGACACTCGATGAACTTGGCCTAACCAACAAACAAGAAGCTTTGTTTTTAGAGTTAGTCTGA 1740 0.458 MARPNQETIDTFISITGVSEPIALQKLEEHGGSLNDAVNAYFSEGDRNLMTSSAAVPQGDFMDIDDQHEDEIHRPPSLLSFPRNLDPFSLLDPTRSIFDTHLGVTNQTPFVTHPREVREIPIEVKDGSQSTPQAGHIPIVEDVTGTVHAQGPDIHGSVVILDDDDENTPPAQTHSSPDRIARPSAPNFENLPDSSNEIEEEMIRAAIEASKREAEENYSNHELGRQTDLSESGPNPRQTFLEDPELAHAVSLSLRTAEQEKVRRVQEGDVGAATAGPSKAPGVELGEVSSNGRLQAGSLSFKDEDEDVEEMPLVRNRSRHVSLTSTGSGKEAELIESSTLASTAVEESSSPPPDNDSSFHSHEWGGISSVEHDEAVMLEAAMFGGIPEGSSYRHAYAPHEFMQNRGFHPQPAPLAYRPPSPSLEAQRLIREQQDDEYLASLQADREKELKAIEEAEAAREEERRRAEESHKKLQEERELEAQLAAKEVSLPPEPSSDNDNAVNLLVKMPDGSRRGRRFLRSDKLQALFDFIDIGRQVKPSSYRLVRPYPRRAFGVEESAVTLDELGLTNKQEALFLELV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03084 579 Gene3D - 498 578 - -
Trre15g03084 579 SUPERFAMILY Ubiquitin-like 460 575 IPR029071 -
Trre15g03084 579 MobiDBLite consensus disorder prediction 212 242 - -
Trre15g03084 579 MobiDBLite consensus disorder prediction 260 364 - -
Trre15g03084 579 Pfam UBA-like domain 6 46 - -
Trre15g03084 579 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Trre15g03084 579 ProSiteProfiles UBX domain profile. 497 575 IPR001012 GO:0005515
Trre15g03084 579 CDD UBA_Ubx1_like 6 42 - -
Trre15g03084 579 Coils Coil 438 483 - -
Trre15g03084 579 SMART uim 198 217 IPR003903 -
Trre15g03084 579 SMART uim 241 260 IPR003903 -
Trre15g03084 579 SMART ubx_3 494 578 IPR001012 GO:0005515
Trre15g03084 579 Gene3D - 191 268 - -
Trre15g03084 579 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 199 217 IPR003903 -
Trre15g03084 579 MobiDBLite consensus disorder prediction 318 364 - -
Trre15g03084 579 Pfam UBX domain 498 577 IPR001012 GO:0005515
Trre15g03084 579 MobiDBLite consensus disorder prediction 161 196 - -
Trre15g03084 579 CDD UBX 503 577 - -
Trre15g03084 579 MobiDBLite consensus disorder prediction 223 237 - -
Trre15g03084 579 Gene3D - 1 45 - -
Trre15g03084 579 PANTHER FAS-ASSOCIATED PROTEIN 11 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03084 Trre-Chr15 28010749 28014693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03084 - - tpra:123887291 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03084 15 28010749 28014693 Trre15g03084 15 28010749 28014693 ECH