Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0433 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal23g0270 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g2049 . . . . . . . . . . . . . . . . . .
Vvi2g0434 . . . . . . . Aed6g1333 . . . . . . . . . . . Apr10g1505 . . . . . . . . . Car07g01162 . Cca11g01709 . . . . . . . . Gma01g02178 . Gma05g00459 Gma17g01214 Gso1g1845 . Gso1g1845 Gso1g1845 . . Lal23g0271 Lal15g1373 . . . . . . . . . . . . . . . . . . . . . Lja4g2410 . . . . . . . . . . . . . . . . . Psa4g1561 . . . . . . . . . . . . . . . . . Ssu6g1509 . . . . . . . . . . . . . . . . . . . Vra7g1477
Vvi2g0435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0436 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0438 . . . . . Adu02g00579 . . . . . . . . . . . . . Apr10g1375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu10g00476 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste6g02192 . . . . . Pumo7g00890 . Pvu10g0986 . Rops4g01427 . . . Spst4g01780 . . . . . . . . . . . Vian9g00713 . . . Vimu9g00374 . . . . . .
Vvi2g0439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0440 . . . . Adu03g02837 . . . . Aev03g3041 . Ahy13g2887 . Aip03g03256 . . . Amo13g3543 . . . . . . . . . . . . . . . . . Dod04g2685 . . . . . . Gma05g02005 Gma08g00111 . . . . . . . . Lal16g1234 . . . . . . . . . . . . . . . . . . . Lja4g0452 . . . . . . . . . . . . . Phco4g03256 . . . . Psa7g0830 Pste3g01134 . . Pte12g00088 . . . . Pvu2g2953 . . . . . Spst3g01132 . . . . . . . . . . . . . . . Vimu11g04365 . . . Vivi5g05791 . . .
Vvi2g0441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0432 Chr2 3652315 3655516 -
Vvi Vvi2g0433 Chr2 3662441 3666724 -
Lal Lal23g0270 Chr23 2696785 2700931 -
Sto Sto11g2049 Chr11 19322597 19323732 -
Vvi Vvi2g0434 Chr2 3670904 3678096 +
Aed Aed6g1333 Chr6 18027382 18033132 +
Apr Apr10g1505 Chr10 27487013 27496087 -
Car Car07g01162 Chr07 10436349 10444647 -
Cca Cca11g01709 Chr11 41511885 41517612 +
Gma Gma01g02178 Chr01 57068188 57073967 +
Gma Gma05g00459 Chr05 4362817 4368007 -
Gma Gma17g01214 Chr17 10663121 10667444 -
Gso Gso1g1845 Chr1 55236704 55242552 +
Gso Gso1g1845 Chr1 55236704 55242552 +
Gso Gso1g1845 Chr1 55236704 55242552 +
Lal Lal23g0271 Chr23 2712445 2717195 +
Lal Lal15g1373 Chr15 15859046 15864486 +
Lja Lja4g2410 Chr4 27089376 27093411 -
Psa Psa4g1561 Chr4 109054608 109059108 -
Ssu Ssu6g1509 Chr6 24759212 24763519 -
Vra Vra7g1477 Chr7 32091827 32096184 +
Vvi Vvi2g0435 Chr2 3679351 3708119 +
Vvi Vvi2g0436 Chr2 3719190 3720336 -
Vvi Vvi2g0437 Chr2 3722284 3722932 -
Vvi Vvi2g0438 Chr2 3725014 3726687 +
Adu Adu02g00579 Chr02 7611103 7617364 -
Apr Apr10g1375 Chr10 25999364 26006208 -
Lapu Lapu10g00476 Chr10 7139885 7146037 +
Pste Pste6g02192 Chr6 10390410 10407791 -
Pumo Pumo7g00890 Chr7 15556856 15565247 -
Pvu Pvu10g0986 Chr10 34641937 34652143 +
Rops Rops4g01427 Chr4 36607568 36616514 +
Spst Spst4g01780 Chr4 57881424 57892042 +
Vian Vian9g00713 Chr9 9257573 9279675 -
Vimu Vimu9g00374 Chr9 4428485 4439634 -
Vvi Vvi2g0439 Chr2 3727364 3728727 -
Vvi Vvi2g0440 Chr2 3729508 3732851 -
Adu Adu03g02837 Chr03 107034816 107037892 +
Aev Aev03g3041 Chr03 29325693 29328412 -
Ahy Ahy13g2887 Chr13 115488688 115492654 +
Aip Aip03g03256 Chr03 106086793 106090242 +
Amo Amo13g3543 Chr13 119965603 119970712 +
Dod Dod04g2685 Chr04 50837897 50841112 -
Gma Gma05g02005 Chr05 41412346 41415363 -
Gma Gma08g00111 Chr08 969011 971973 -
Lal Lal16g1234 Chr16 8607005 8610384 +
Lja Lja4g0452 Chr4 3685998 3688904 +
Phco Phco4g03256 Chr4 53209815 53212363 -
Psa Psa7g0830 Chr7 59819646 59824779 -
Pste Pste3g01134 Chr3 7248755 7251610 +
Pte Pte12g00088 Chr12 761281 764828 -
Pvu Pvu2g2953 Chr2 45061804 45064669 -
Spst Spst3g01132 Chr3 14649084 14651850 +
Vimu Vimu11g04365 Chr11 64963368 64965921 -
Vivi Vivi5g05791 Chr5 161793912 161797143 -
Vvi Vvi2g0441 Chr2 3738343 3740885 -