Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2186 ATGGCAAGGCCTAATCAAGAGGCGGTTGAGACTTTCGTCAGCATCACTGGCTTGCCTGAGGCAGTAGCGCTGCAAAAACTCGAGGAACATGGTGGTAATCTCAATCAAGCAGTCAATGCATATTTTAGTGAAGGAGACAGAAACCTAACGACTGGCTCTCACAACAGCTCTACAGCATTTCCTCAAGAGGATTTCATGGATATAGATGATCAACACGATGCAGATATTCACAGAATTCCCTCACTTCCAGCTTTAGCACCAAATCTCAATCCGTTTTCTCTTCTTGATTCCACTATTGGGAGAGGTATGTTTGGTACTCCTCTTGATCCGGCAGTCCAGGCACCAATTGTTACACATCCTAGAGAGGTAAGGGAGATTCCTATAGAGGTTAAGGATGGTAACCAATCCACTACTCAGTCTGGTCGTGTTCCATCTATTGAAGATGTCACTGGAACTGTTGATGCCCATGGTCCAGATATCCATGGGACTGTCATAATCAATGATGAAGATGATGACAATGCTCCACCTGCCCAGATTGCACATCGACATGAGCAAAATGATAAGATATTGGCTGATACTTCACTCAGTAGCAGTGCTAGACCTAGTGCTCCTGAATCTGAGAATTTACCAGATTATGGCAATGAGATAGAAGAAGAAATGCTTCGGGCAGCCATTGAGGCTTCTAAACGGGAGGCTGAGGAAAATTACAGAAATCAAAAACTTGGCAGACAAACTGACTCAAGTGAATCAGGATCACAGTCAAGGCAATCTTACTTGGAGGATCCTGAGCTTGCCCATGCAGTTTCATTGTCCCTGAAGACAGCTGAGCAAGAAAAAGCATGGCGTGTACAGGGAGGAGATTCTGAATCTGCACCAGCAGGGCCATCTAAGTCATCAGAGGCTGGACTAGGGGAAGTGGCATCTAATGGAAGGTTGCAGGCAGGGAGTTTGTCCTTTCATGATGAAGCTGAAGATGTAGAGGAGCAGCCACTCATTAGAAACAGGTCTAGACATATGTCTTCAGGATCCACAGGATCAGTCAAAGATGTTGAATTTGCCGAGGCTAGCACACTACCAAGCACAGCACCACAGGAGACCAGTAATCCTCCTAACAGAAATTCCTTTCCCTCTGAGGAGTGGGGTGGCATATCTTCAGAGGAACATGATGAAGCAGTAATGCTTGAAGCTGCAATGTTTGGTGGAATCCCAGAAGGGACTGGATATCAGTATGCTTATGCACCACATGAGTTTATGCAAGGTAGGGGGTCTAATCCTCGTGCCCCATATCGCCCACCTTCACCATCACTGGCAGCACAGCGTCTGATAAGGGAACAGCAGGATGATGAATATCTCGCATCATTACAAGCAGACAGAGAAAGAGAATTGAAGGAAGCCGAGGCTGCCCGTGAAGAGGAAAGACGGATAGCAGAAGAATCCCGCAGGAAATTACTGGAAGAGCAGGAATTGGAAACACAGTTAGCCGCCAAAGAAGTTTCTCTGCCACCAGAACCATCATCAGATGATGATAACGCTGTTAACTTGCTGGTAAAAATGCCAGATGGCAACCGTCGTGGACGCCGATTCCTAAGATCTAATAGACTACAGTCTCTGTTCGACTTCATAGATATCGGTAGGATGGTGAAACCAGGCAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCCTTTAGTGATGGAGAAAGTGCTGCGAGCCTGGCTGAACTTGGCCTAACCAACAAGCAAGAAGCTTTGTTTTTGGAGTTAATCTGA 1770 0.4633 MARPNQEAVETFVSITGLPEAVALQKLEEHGGNLNQAVNAYFSEGDRNLTTGSHNSSTAFPQEDFMDIDDQHDADIHRIPSLPALAPNLNPFSLLDSTIGRGMFGTPLDPAVQAPIVTHPREVREIPIEVKDGNQSTTQSGRVPSIEDVTGTVDAHGPDIHGTVIINDEDDDNAPPAQIAHRHEQNDKILADTSLSSSARPSAPESENLPDYGNEIEEEMLRAAIEASKREAEENYRNQKLGRQTDSSESGSQSRQSYLEDPELAHAVSLSLKTAEQEKAWRVQGGDSESAPAGPSKSSEAGLGEVASNGRLQAGSLSFHDEAEDVEEQPLIRNRSRHMSSGSTGSVKDVEFAEASTLPSTAPQETSNPPNRNSFPSEEWGGISSEEHDEAVMLEAAMFGGIPEGTGYQYAYAPHEFMQGRGSNPRAPYRPPSPSLAAQRLIREQQDDEYLASLQADRERELKEAEAAREEERRIAEESRRKLLEEQELETQLAAKEVSLPPEPSSDDDNAVNLLVKMPDGNRRGRRFLRSNRLQSLFDFIDIGRMVKPGSYRLVRPYPRRAFSDGESAASLAELGLTNKQEALFLELI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2186 589 Gene3D - 1 45 - -
Pvu3g2186 589 MobiDBLite consensus disorder prediction 194 213 - -
Pvu3g2186 589 Pfam UBX domain 508 587 IPR001012 GO:0005515
Pvu3g2186 589 MobiDBLite consensus disorder prediction 318 334 - -
Pvu3g2186 589 MobiDBLite consensus disorder prediction 357 380 - -
Pvu3g2186 589 SMART ubx_3 504 588 IPR001012 GO:0005515
Pvu3g2186 589 CDD UBX 513 587 - -
Pvu3g2186 589 Pfam UBA-like domain 6 46 - -
Pvu3g2186 589 CDD UBA_Ubx1_like 6 42 - -
Pvu3g2186 589 SMART uim 259 278 IPR003903 -
Pvu3g2186 589 SMART uim 216 235 IPR003903 -
Pvu3g2186 589 Coils Coil 451 488 - -
Pvu3g2186 589 MobiDBLite consensus disorder prediction 132 177 - -
Pvu3g2186 589 PANTHER FAS-ASSOCIATED PROTEIN 1 589 - -
Pvu3g2186 589 MobiDBLite consensus disorder prediction 229 260 - -
Pvu3g2186 589 PANTHER OS09G0525600 PROTEIN 1 589 - -
Pvu3g2186 589 MobiDBLite consensus disorder prediction 132 146 - -
Pvu3g2186 589 Gene3D - 508 588 - -
Pvu3g2186 589 MobiDBLite consensus disorder prediction 279 389 - -
Pvu3g2186 589 Gene3D - 211 284 - -
Pvu3g2186 589 MobiDBLite consensus disorder prediction 241 259 - -
Pvu3g2186 589 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Pvu3g2186 589 MobiDBLite consensus disorder prediction 163 177 - -
Pvu3g2186 589 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 217 235 IPR003903 -
Pvu3g2186 589 SUPERFAMILY Ubiquitin-like 470 585 IPR029071 -
Pvu3g2186 589 ProSiteProfiles UBX domain profile. 507 585 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2186 Pvu-Chr3 42712531 42716851 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2186 - - gmx:100784059 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2186 3 42712531 42716851 Pvu3g2186 3 42712531 42716851 ECH