Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3540 ATGGCCGAACCTGATACCGAAACGCCTGAACAAACAAATACCCAGATAAGCAGTAACGCAGAATGCACACCTGAACAACAACTTCAGATTGTAGACAAAGCTATTGATCGCCCTGAGTGGTTACCTGATGGGTGGACTGTGGATATCAGAACTCGCAAAACTGGTTCGCTTACGGGATCTGGATATAAGTGTTACATTGAACCATTAAATGGATACACATTCTACTCCAAACCTGCTGTATTACGATATCTGGAACCTAAGGACAATACATGCATTCCGAAGAAGAAGAAAGCGAAATCCCCGGCCACAGGGTCCCCAAGCATCGTTGCGATTGAGAAATCCATTGCAGAGGATCTACCACCTGGGTGGATAAAAGAAGTAACAATTAGAAAAAACCACAACGGCATCAGGAAAGATCCGGTATATAAAGATCCAGTAAGTGGCCATGCATTCCGTTCCAAGAGGGATGTACAGCGTTATCTTGCATCTGGGTATATTAGGCCTTCTAGAAAAAGAATCCAGGATGGAGACAAGTTAACTCCATCACCTGCTGGTAAAAGACACAAACTGAATGAGTCTGCACCTGAACAACAGCTTTCTGCTGGTGGAGCAACATTTGATAAAAGCAGCTTAGAACTGATAGATGACAACAGCTCAAGAAAAGGACAAGATGTGAACATCCAATCTGGAATGATGATGGTTGCTCCTATTTCTGTTGTAAAGATGCATTCACTAGAGGATGATAGTGCTGAAGACCTTTCTGAAATTGAAAAAATGTCTGATCCAGATGATATGCAAGAGGAGCATGTTGGGAATAGGATGAGAGAGGGGGAGTTCAATGTGCATCGCCAATCTTCACCACAACTCCATAATATGAGAGAGCTGCACAGTCCTTCCCAGGTTTTGAAGCAACTTGGTGGATTTGATGATGACATGAAGACGAATAATTCCATATCCTGTGAAAAGACCCCCAAACAAGGTCGCAAAAGGTCAAAAGTTGATATCAGTGCAGACTTGCAACAACGTGAGGGTGTGTCAGCTGCAGAGCTTGCAGATTGTGCACCGCCAAAAAGAGAGTCAGCAAATAAAAGACGGAAATCTTATAAAACCCCACCTATTACAGGTGATCAACTGGAGAAACTGAGAGGTAAAGAAATGTATGATGAGAAATCAGAACCCCAAGTGTCGTCGGCATTCAACTACACTTCGTCTGACCCAAGCTTAGAAAATGCAACTAATAATCTGCAGAGTATGTTACTAGTTGAGAATGGACCTAATACTACTGGAATCACTACAGTTCTTCAAACTGATATTCAAAAGAAATCGGTTGACAGTGTTACTGGAAGAAGCGGGGATGGAAACCCACAGGTACGTTCAAATAAATCCAAAAAGAAGAAAGAGCTTAAAGTGCCTATGCGAGTATCAAAGCGACTTGCTGGCCTTGAACCTGAGGTACAGCCTTCCGGAAGAGCTCTTGAATATGCCACTAGAAAATCAAGAAAAGAACCACCACCTGCAACTGCTACTGAAATTTCAATTGATGGGGCATCTGACCATCTTAACCTTGAGGAAGAAACCAAGCTTACATGTCATGCATCTCATAGTTTGAAAACAGAAGTACTAAGAGAATCATCAAACCAGAGTGAGAAGTCATGCGATGCCCCAACTGTTCCCAAGGAACAATTGCAGAAAGTTATTGAAGCTGAAAATACCGGTGATGAGAGATCAGAGCTACAGCTTCCAGTGCCATTCGGGGACTCTTGGTCAGATCCATGCCTAGAATTTGCATTCAAGACTCTTACTGACGATGTGCTATTTCATCCTGCCACTGACATTTTGCCTGTTATAACTCCCGATCTTAATTACCTACCAAATACTGAATTGCATGGGGTGATGATAACCAGTGAAGAAGCTCATGATAACTCAAACCAACCCCAGAGCAAGAAAGAGCTTAATATGGTTAATCCCGCAGAACCATTCCCAAGGCAACTAGAGAATGCTCCTAAATTTACAACTAGTGAACCTTATGGTGATGAAGGCTACACAAGGAATTTAGCTGGAGAATCTTTACATAGTGAAGTTGGAAACGTAATGCCACTCATGCATCATACAGTGATACACCAAGAGCCATTGAAGGAAGGTGCACAGGTTCATAAGGGTGAATCCATTATAATCGGGCCACCTCTGGTTGAAACTGGAACTGTAAACCATGATAACTCTAAGTCACAGTTCTGTGCCTCCTTTGCAAATTCTTGGTCTGATCCATGCCTTGAATTTGCATTTAAGACTCTTACAGGTGCGACATCAGCGGACAATAATTTACAGCAACCTCCAAATTTCCATAACCAGATCGATGGTGGCTCATTGTTTCCTGACTTTGGATCTTCCAGCTTTTCTCAGAGTAATTTCTCATTTTACCATGACATAGGAGTGAATTCCATGCCGGGGCAACAATCATCACGTAGCAATCCAATTCCACCCTTAGAAAAGGCGAGCCAGCGAGGTTATCCTGAAGTTGATCCTCAAAATCAATATTCTCAGTTCCAGAATCATTTTCCAAGGTAA 2565 0.4253 MAEPDTETPEQTNTQISSNAECTPEQQLQIVDKAIDRPEWLPDGWTVDIRTRKTGSLTGSGYKCYIEPLNGYTFYSKPAVLRYLEPKDNTCIPKKKKAKSPATGSPSIVAIEKSIAEDLPPGWIKEVTIRKNHNGIRKDPVYKDPVSGHAFRSKRDVQRYLASGYIRPSRKRIQDGDKLTPSPAGKRHKLNESAPEQQLSAGGATFDKSSLELIDDNSSRKGQDVNIQSGMMMVAPISVVKMHSLEDDSAEDLSEIEKMSDPDDMQEEHVGNRMREGEFNVHRQSSPQLHNMRELHSPSQVLKQLGGFDDDMKTNNSISCEKTPKQGRKRSKVDISADLQQREGVSAAELADCAPPKRESANKRRKSYKTPPITGDQLEKLRGKEMYDEKSEPQVSSAFNYTSSDPSLENATNNLQSMLLVENGPNTTGITTVLQTDIQKKSVDSVTGRSGDGNPQVRSNKSKKKKELKVPMRVSKRLAGLEPEVQPSGRALEYATRKSRKEPPPATATEISIDGASDHLNLEEETKLTCHASHSLKTEVLRESSNQSEKSCDAPTVPKEQLQKVIEAENTGDERSELQLPVPFGDSWSDPCLEFAFKTLTDDVLFHPATDILPVITPDLNYLPNTELHGVMITSEEAHDNSNQPQSKKELNMVNPAEPFPRQLENAPKFTTSEPYGDEGYTRNLAGESLHSEVGNVMPLMHHTVIHQEPLKEGAQVHKGESIIIGPPLVETGTVNHDNSKSQFCASFANSWSDPCLEFAFKTLTGATSADNNLQQPPNFHNQIDGGSLFPDFGSSSFSQSNFSFYHDIGVNSMPGQQSSRSNPIPPLEKASQRGYPEVDPQNQYSQFQNHFPR* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3540 854 PANTHER OS04G0193200 PROTEIN 3 423 IPR038945 -
Amo13g3540 854 PANTHER OS04G0193200 PROTEIN 440 847 IPR038945 -
Amo13g3540 854 CDD MBD 119 161 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 814 854 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 441 457 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 346 406 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 171 204 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 837 854 - -
Amo13g3540 854 SUPERFAMILY DNA-binding domain 117 164 IPR016177 GO:0003677
Amo13g3540 854 MobiDBLite consensus disorder prediction 539 559 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 1 24 - -
Amo13g3540 854 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 109 183 IPR001739 GO:0003677
Amo13g3540 854 MobiDBLite consensus disorder prediction 441 470 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 356 370 - -
Amo13g3540 854 PANTHER OS04G0193200 PROTEIN 3 423 - -
Amo13g3540 854 PANTHER OS04G0193200 PROTEIN 440 847 - -
Amo13g3540 854 Gene3D - 114 204 - -
Amo13g3540 854 Gene3D - 7 113 - -
Amo13g3540 854 Pfam Methyl-CpG binding domain 39 89 IPR001739 GO:0003677
Amo13g3540 854 Pfam Methyl-CpG binding domain 116 164 IPR001739 GO:0003677
Amo13g3540 854 SUPERFAMILY DNA-binding domain 34 90 IPR016177 GO:0003677
Amo13g3540 854 MobiDBLite consensus disorder prediction 171 193 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 486 511 - -
Amo13g3540 854 MobiDBLite consensus disorder prediction 308 334 - -
Amo13g3540 854 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 31 106 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3540 Amo-Chr13 119944442 119950612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3540 - - adu:107479990 1623.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3540 13 119944442 119950612 Amo13g3540 13 119944442 119950612 ECH
Amo13g3540 13 119944442 119950612 Amo03g2522 03 110108873 110115061 hybridization
Amo05g2468 05 52253633 52259261 Amo13g3540 13 119944442 119950612 PCT