Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01313 ATGGCAAGGCCTAATCAAGAGGCGGTTGAGACATTCGTCAGCATCACTGGTTTGCCTGAGGCAGTAGCGCTGCAAAAGCTCGAGGAGCATGGAGGTAATCTCAATGAAGCAGTCAATGCACATTTTAGTGAAGGAGACAGAATTTTAACGACTGGCACTCACAATAGCTCTACTGCATTTCCTCAAGATGATTTCATGGATATAGATGATCAACAGGATGCAGATATTCAGAGAATTCCTTCACTTCCAGCTTTAGCAGCAAATGTCAATCCGTTTTCTCTTCTTGATCCTACACTTGGGAGAGGTATATTTGGTACTCCTCTTGATTCAACTGTCCAGGCACCCTTTGTTACACATCCTAGGGAGGTGAGGGAGATTCCTATAGAGGTTAAGGAGGGTAACCAATCCACTACTCAATCTGGTCATCCATCCATTGAAGATGTCACTGGAACTGTTGATGCCCATGGTCCAGATATCCATGGGACTGTTATAATCAACGATGAAGATGATGACACTCCACTTGCCCAGATTGCACATCAAGATGAGCAAAACCATAACATCCTGGCTGATACCTCACTCAATACCCGTGCTAGACCTAGTGCTCCTGAATCTGAGAATTTACCAGATTATAACAATGACATAGAAGAAGAAATGCTTCGGGCAGCCATTGAGGCTTCTAAACGGGAGGCTGAGGAAAATTACAGAACTCACAAACTTGGAAGACAAACTGACTCAACTGAATCAGGATCACAGTCAAGGCAATCATATTTGGAGGATCCCGAGCTTGCCCATGCAGTTTCATTGTCTCTAAAGACAGCTGAGCAAGAAAAAGCATGGCGTGTACAAGGAGGAGATTCTGAATCTCTACCAGCCGGGCCATCAAAGTCATCAGAGGCTGGACCAGTGGAAGTGGCATCTAATGGAAGGTTGCAGGCAGGAAGCTTGTCCTTTCATGATGAAGCTGAAGATATAGAGGAGCAGCCACTCGTTAGGAACAGATCTAGACATATGTCTTCAGGATCCGCAGGGTCAGTCAAAGATGTTGAATTTGCTGAGGCTAGCACACTACCAAGCACAGCGCCACAGGAGACCAGTAATCCTCCTCATAATAGAAATTCCTTCCCCTCTGATGAGTGGGGTGGCATATCTTCAGAGGAGCATGATGAAGCAGTAATGCTTGAAGCTGCAATGTTTGGTGGAATCCCGGAAGGTACTGGATACCAGTATGCTTATGCACCACATGAGTTTATGCAAGGTAGGGGTTCTAATCCTCGTGCCTCATATCGCCCACCTTCACCATCACTAGCAGCACAGCGTTTGATAAGGGAACAGCAGGATGATGAATATCTTGCATCATTACGAGCAGACAGAGAAAAAGAATTGAAGGCCAGAGAAGAAGCCGAGGCTGCTCTTGAAGAGGAAAGGCGGAGAGCAGAAGAAACTCGCAGGAAATTACAGGAAGAGCAGGAATTGGAAACACAATTAGCCGCCAAAGAAGTTTCCCTGCCTCCAGAACCATCATCAGATGATGATAACGCTGTTAATTTGCTGGTAAAAATGCCAGATGGCAACCGTCGTGGACGCCGATTCCTAAGATCTAATAGGCTACAGTCTCTGTTCGACTTCATAGACATCGGTAGGGTGGTGAAACCAGGCAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCTTTTAGTGATGAAGAAAGTGCTTCAACCCTGGCTGAACTTGGCCTAAACAACAAGCAAGAAGCTTTGTTTTTGGAGTTAATCTGA 1776 0.4578 MARPNQEAVETFVSITGLPEAVALQKLEEHGGNLNEAVNAHFSEGDRILTTGTHNSSTAFPQDDFMDIDDQQDADIQRIPSLPALAANVNPFSLLDPTLGRGIFGTPLDSTVQAPFVTHPREVREIPIEVKEGNQSTTQSGHPSIEDVTGTVDAHGPDIHGTVIINDEDDDTPLAQIAHQDEQNHNILADTSLNTRARPSAPESENLPDYNNDIEEEMLRAAIEASKREAEENYRTHKLGRQTDSTESGSQSRQSYLEDPELAHAVSLSLKTAEQEKAWRVQGGDSESLPAGPSKSSEAGPVEVASNGRLQAGSLSFHDEAEDIEEQPLVRNRSRHMSSGSAGSVKDVEFAEASTLPSTAPQETSNPPHNRNSFPSDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYQYAYAPHEFMQGRGSNPRASYRPPSPSLAAQRLIREQQDDEYLASLRADREKELKAREEAEAALEEERRRAEETRRKLQEEQELETQLAAKEVSLPPEPSSDDDNAVNLLVKMPDGNRRGRRFLRSNRLQSLFDFIDIGRVVKPGSYRLVRPYPRRAFSDEESASTLAELGLNNKQEALFLELI 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01313 591 SMART uim 214 233 IPR003903 -
Vian1g01313 591 SMART uim 257 276 IPR003903 -
Vian1g01313 591 SMART ubx_3 506 590 IPR001012 GO:0005515
Vian1g01313 591 MobiDBLite consensus disorder prediction 180 212 - -
Vian1g01313 591 Gene3D - 1 45 - -
Vian1g01313 591 MobiDBLite consensus disorder prediction 227 242 - -
Vian1g01313 591 Gene3D - 510 590 - -
Vian1g01313 591 MobiDBLite consensus disorder prediction 316 332 - -
Vian1g01313 591 ProSiteProfiles UBX domain profile. 509 587 IPR001012 GO:0005515
Vian1g01313 591 CDD UBX 515 589 - -
Vian1g01313 591 MobiDBLite consensus disorder prediction 180 207 - -
Vian1g01313 591 MobiDBLite consensus disorder prediction 243 257 - -
Vian1g01313 591 MobiDBLite consensus disorder prediction 277 302 - -
Vian1g01313 591 MobiDBLite consensus disorder prediction 355 379 - -
Vian1g01313 591 Pfam UBA-like domain 6 46 - -
Vian1g01313 591 Gene3D - 208 282 - -
Vian1g01313 591 MobiDBLite consensus disorder prediction 465 490 - -
Vian1g01313 591 Pfam UBX domain 510 589 IPR001012 GO:0005515
Vian1g01313 591 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 215 233 IPR003903 -
Vian1g01313 591 SUPERFAMILY Ubiquitin-like 472 587 IPR029071 -
Vian1g01313 591 MobiDBLite consensus disorder prediction 315 382 - -
Vian1g01313 591 CDD UBA_Ubx1_like 6 42 - -
Vian1g01313 591 Coils Coil 450 498 - -
Vian1g01313 591 MobiDBLite consensus disorder prediction 227 258 - -
Vian1g01313 591 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Vian1g01313 591 PANTHER FAS-ASSOCIATED PROTEIN 11 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01313 Vian-Chr1 14171894 14175900 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01313 - - vum:124835115 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01313 1 14171894 14175900 Vian1g01313 1 14171894 14175900 ECH