Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03063 ATGGCTACGCCAAATCAAGAGACCGTTGATACTTTTATTAGTATAACTGGTGTTTCTGAACCGGTGGCACTGCAAAAACTACAGGAGCATGGTGGTAGTCTTAATGAAGCTGTAAATGCATTTTTTAGCGAAGGAGACAGAAATTCGATGACCAGCTCTGCCTCATTTCCTCAAGGGGATTTCATGGACATAGATGATGATCCACGTGATGATGAAATTCTTAGACCTCCATCTCTTCTATCTGCAGCCAGAAATCTCCATCCATTTTCTCTTCTTGATCCTACACTTGGTAGAAGTATATTTGATACTCATCTCGGTTCAACAAACCAGAGGCCATTTGTTACACATCCAAGAGAGGTAAGGGAGATTCCAATAGAGGTTAAGGATGGTAGTCAGTCCACTCCTCAAGCTGGCCACACTCCAATCGTTGAAGATGTCACTGGAACTGTTCATGCCCAAGATAGTAGCAATGACATAGAAGAAGCAATGATTCGTGCAGCCATTGAGGCATCCAAACGGGAGGCTGAGGAAAATTACACCAATCACGAACTTGGCAGACAAGACTTAAGTGAATCTGGGCCTAACCCAAGGCAAACATTTGTGGAGGATCCTGAGCTTGCCCATGCAGTTTCATTGTCCCTGAAGACAGCAGAACAAGAAAAAGCACGGCGTGTACAAGAAGGTGATGTTGGAGCACCTTCAGCAGGACCATCTAAGGCACCAGCGGTTGAATTAGGGGAAGTATCTTCGAATGGGAGATTGCAGGCAGGAAGCTTATCCTTTAAAGATGAAGATGAAGATGTAGATGTAGAGGAGATGCCTTTGGTTAGGCACAGGTCTAGAAATGTGTCGCTCGGCTCCACAGGACCCGGCAAAGATGTTGACGTTATCGAGTCTAGCACACTGCCTAGCACAACACGTCAGGAAAGCAGCAGTCCTCCTCCGCAAAATGATGTTTCCTTTCCCTCTGATGAATGGGGTGGCATTTCTTCAGTGGAACATGATGAAGCAGTAATGCTTGAGGCTGCAATGTTTGGTGGAATCCCGGAAGGAAGTGGTTATCGCCATGCTTATGCACCACATGAGTTCATGCAGAATAGGGGTTTCAATCCTCAGCCCGCACCTCTTGCTTATCGCCCACCTTCACCATCATTGGAGACTCAACGCTTGATAAGGGAACAACAGGATGATGAATACCTTGCATCATTACAAGCAGACAGAGAAAAAGAGTTGAAAGCCATAGAGGAAGCCGAGGCTGCTCGCGAAGAGGAAAGACGGAAGGCAGAAGAATCTCAAAGGAAGTTGCAGGAAGAGCAGGAATTAGAAACACAGCTAGCTGCCAAAGAAGTCTCTCTACCACCAGAGCCAGCCTCAGGTGATGATAATGCTGTAAACCTGCTGGTAAAAATGCCAGATGGCAGCCGTCGGGGACGCCGATTCCTAAGATCGGATAAGCTCCAGTCTCTTTTCGACTTCATCGATATTGGTAGACAAGTTAAACCAAGCAGTTACAGATTGGTGAGACCATATCCTAGGCGTGCCTTTGGTGTTGGAGAAAGTGCTGTGACACTGGAAGAGGTTGGCCTAACCAACAAGCAAGAAGCTCTGTTTTTGGAGTTAGTCTGA 1626 0.4643 MATPNQETVDTFISITGVSEPVALQKLQEHGGSLNEAVNAFFSEGDRNSMTSSASFPQGDFMDIDDDPRDDEILRPPSLLSAARNLHPFSLLDPTLGRSIFDTHLGSTNQRPFVTHPREVREIPIEVKDGSQSTPQAGHTPIVEDVTGTVHAQDSSNDIEEAMIRAAIEASKREAEENYTNHELGRQDLSESGPNPRQTFVEDPELAHAVSLSLKTAEQEKARRVQEGDVGAPSAGPSKAPAVELGEVSSNGRLQAGSLSFKDEDEDVDVEEMPLVRHRSRNVSLGSTGPGKDVDVIESSTLPSTTRQESSSPPPQNDVSFPSDEWGGISSVEHDEAVMLEAAMFGGIPEGSGYRHAYAPHEFMQNRGFNPQPAPLAYRPPSPSLETQRLIREQQDDEYLASLQADREKELKAIEEAEAAREEERRKAEESQRKLQEEQELETQLAAKEVSLPPEPASGDDNAVNLLVKMPDGSRRGRRFLRSDKLQSLFDFIDIGRQVKPSSYRLVRPYPRRAFGVGESAVTLEEVGLTNKQEALFLELV 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03063 541 Coils Coil 400 448 - -
Vifa4g03063 541 SMART uim 201 220 IPR003903 -
Vifa4g03063 541 SMART uim 159 178 IPR003903 -
Vifa4g03063 541 MobiDBLite consensus disorder prediction 417 441 - -
Vifa4g03063 541 MobiDBLite consensus disorder prediction 174 203 - -
Vifa4g03063 541 Gene3D - 460 540 - -
Vifa4g03063 541 PANTHER FAS-ASSOCIATED PROTEIN 11 539 - -
Vifa4g03063 541 Gene3D - 1 45 - -
Vifa4g03063 541 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Vifa4g03063 541 CDD UBA_Ubx1_like 6 42 - -
Vifa4g03063 541 MobiDBLite consensus disorder prediction 365 386 - -
Vifa4g03063 541 CDD UBX 465 539 - -
Vifa4g03063 541 SMART ubx_3 456 540 IPR001012 GO:0005515
Vifa4g03063 541 MobiDBLite consensus disorder prediction 217 328 - -
Vifa4g03063 541 ProSiteProfiles UBX domain profile. 459 537 IPR001012 GO:0005515
Vifa4g03063 541 MobiDBLite consensus disorder prediction 298 319 - -
Vifa4g03063 541 Pfam UBA-like domain 6 46 - -
Vifa4g03063 541 Pfam UBX domain 460 539 IPR001012 GO:0005515
Vifa4g03063 541 SUPERFAMILY Ubiquitin-like 422 537 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03063 Vifa-Chr4 985030848 985034731 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03063 - - gmx:100777000 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03063 4 985030848 985034731 Vifa4g03063 4 985030848 985034731 ECH