LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g01129	ATGAGGAAGAAAGAGAAGCTAACCGGGAATGGAAGCAAAGACTTGGTTGGAGCAGAGTCAGCGGGGGGTTCAACAGTGATGGGCAAAATCCAGCTTAGTGTGAATTGGAGTGCAAGTTGTGGTTCCTATCCTGATATTATAAAGTCTGAAGAAACCAATAGACAAATTGATACTAACACAAAATCTAATTCTAAACAGCAGAGTCTAGAGAAAGCTAATGAACATCCTAAATGGTTACCTGATGGCTGGAATGTGGAAGTCAGAATCCGTAAAAGTGGTTTACACATGGGATCTGGATACAAGGTGTGTTACATCGAACCTTTGAAAGGATACAAATTCTTCTCCAAACCAGAGGTATTACGATATCTTGAAACTGTAAAGGACAACAGTTGCACTTCCCAGAAGGGGAAGCAATGTAGTAAGATACATTCTCCAAATGACAACAATTGCACTTCGAAGAAGGAGAAGAAGTGCAGTAAACTGCATATTCCAAACGACAAGAGTTGCATTTCCAAGAAGGAGAAGAAATGTGCTAACATGGAGTCTCCAAATGTCAACAGTTGCAGTCCCAAGGAGGAGAAGAAGTGCTGTAACACAGACAGCAGCAGTCGCGCACCCAAGAAGGAAAAGAATTGCAGTAACATGGTTTCTCCAACTGATGTTGTGGTTGAGAAGTCTATTGTGGAGGATTTACCACCTGGGTGGGTAAAAGAATTAAAGATTACAAAGAACAGCAAGGGCACTCGGAAAGATCCGTTTTATATTGATCCAGTGAGTGGATATGTATTCCGCTCTAAGAAGGATGTACTGAGGTATCTTGAATCTGGTGATATACGTTCATGTGCCTTTAAGCCAAGTAAAAGACAAATCCAAGATGAAGACAACATAACTCCACCACCTGCTGCCAAGAGACAGAAACTGAAGCAGTCTGCACTCATGCAACAGCTTTCTGCATCCACAGAAATACTTGATAAAAGCAGCTTAGAACTGCCAAATGCCAACAGCCCAAGGAAAGAGCAAAATGCAAATCTGTCATCTAGAACTATGGTTGCTTCTGTTGCCATAGGTGAATCTGTTCCAAAGATGCATCCACTAGATAATGGGGCTGCAAACTCTTCTGAAGTGAAGAAAACATCTGACCCAGGTAGGTCAGCACTTTTGAAAAATGAATCCTTGAAGGAATCAGCAAAAGTACTCTCTGCAGATGATGTGCAAGAGAAAGGGCATGTTTTGAATACAACGGAGAATGGTAATGAAAAGAATTACAGTAACCATAGCATATCCAAAATCAGGAAGGAGTTCAATGTACGTCAGCGGTCATCACCGAGACTTGCTGGAGGTAAATCTGTCCAGCTGGCAAACAATGTGATCAATGAACAGACTCTTCAGGTTCCAAAAAGAAACTTGAGGAGTAGAAACACTCTAGATCTGGATATTTCTGTGGACCAAGCAGCTTCTAAAGAGCAACCACATCCGCAAGAAACAGATAAAATAGAAGACAATAAGTCAGGAATTCAAATTAGCTCAAACAAGTCAGGTAAAAAGAAAGGGTACCATCTTCCTTGTCGTGCTTCAAAACGATTAGCTGCAATTGAACATGAGTCAATAAACTCCAAAGTGGATTTGCAGCAAAGTGTGCTTGGGGCAGTTACAACAGTGCTTGCAGATAAAGGAAAAGTAGCAAATAAAAAGAAAAAGTCAGAACCTCGGCTGGAGAAACGTCAAAATGAAGAGATGGATGATGAGAAATCAGAACCTCAGCTGTCCTTTGCATATCACTATTCTTGGTCTGACCCTAACTTGGAAAATGCAATCAATGCCCTCACTGGTGTGTTACCACCAGCTGATAGTATTCCCAATACTGTCTCTGAAACTGATATTAGTACACTTGTTGATAATGTTACGGGAAGAAGTGCCACTACAATCCCTGAAACTGATGTTCAAAAAACTTTGGTTGGCAATGTTACGGGAAGGAATGCCACTGCAGTTCATGAAATTGATATTCACAAAACTTCAGTTGACAATGTTATTGGAAGAAGTGCCACTACAGTCCCTGAAACTAACATTCAAAAAACTTCAGTTGAAAATGTTACAGGAAGAAGTGCCTCTACAGTCCCCGAAACTGATACTCAAAAAATTTTGGTTGACAATGTTATGGGAAGTAGTGCCACTACAATCCCTGAAAATGATGTTAATAAAACTGTGGTTGAAAACGATTTGGGTATAAGCATCTCTACAGTCCCTGAAACCGATATTCAAAAAACTTTGGTTGAAAACGATTTGGGAATAAGCATCTCTACAGTCCCTGAAACCGATATTCAAAAAACTTTGGTTGACACTGTTACAAGCAGGGACAGTGAAAACAATGTAGTTGACACTGTTACAGGAAGCAAGGACAGAAAATCTCAGGTACGTTCAAATAAACCCAAGAGAAAGAAAGAGCTCAAAGTACCTATGCGATTATCAAAGCGACTTGCTGGCCTTGAACCTGAGTTACTGCCTGCTGAAAGAGCTCTTGAATATTCCACTAGAAAATCATGCAAAGAAGAGCCAACTGCCACTGTTACTTTAACTAATGGAGTGTCTGATCATCACAACGATGCTGGGGAAGAAACCAAGCTTACTCTTCCAGCTTCTGACAGTTTGAAAACAGATGAACTAGCAGAATCCTTAAAACTGAGTGAGAAGTCATACGATTGCCTAACCGATCACAAGGAACAATTGAAGAAAGTTGAAGCTGAAAATGTTGGTGATGTGATATCAGAGCCACAGCTCCCCTTACCGTTTGGGGACTCTTGGTCAGATCCATGCCTAGAATTTGCAATCAAGACTCTTACTGGTGCTTTTCCGGATGATGCTGGTGCAGACATTATGCCTGCTTTGCCTCCTGGCTTCGATAATCCTCCATATAAGCAAGCGCATGGGAGTGTGTTTACAAACATCAATCAAGAAGCTCATGATAACTTGAACCAATCCAAGAACAAGAACGAGAATATGGTTAGCCAACCTGAGTTGAGGACAGGCTCCACCTCTTATGAAAATGCTCTGAACTTTACTACTAGAGAGTCTTATGTTGATCAAGGCAACATAATTAGGAATTTGGATGGAGAACCTCGTCACACTGGAAACATAACACAACCTGTGGATCATTGTAGGAATGTAAACACACCAACACATGAGCAGCCCTTAAAGCAAAATGGACTGGCTGTAGAGGGTGGAATTGTTACAACGGAGCAACAACTATTTGAAACTGGAACTGTAAACCACGATAACTCTGAGTTACAGTATTGTGCTCCGTTTATGAATTCTTGGTCAGACCCATGCCTAGAATTTGCATTTAAGACTCTTACAGGTGTGATACCAGTAGAGGAAAATTTAACACTCCAAGGATGTTTCCCGGAACCTGCTAACTGTCATGAACGAAGGGATGGTGTCTCAATGTTGCCAGATTTCAGATCTTCCAGCTTTTCACAAAGCGATTTCTCGTTTCTCCATGATACAGGAGTTAAGTCCATGCCGGGGCAGCAGTCATCAGTTAGCTCTTCATTCCTACCTTTGGAAAAAACGAGCCTTCCAGGTTTCGCTGGAGTTGATCCTCAAACACACTTTTCTCAGTGCAACAATAATTTTCAAAAAAGGTAA	3642	0.4119	MRKKEKLTGNGSKDLVGAESAGGSTVMGKIQLSVNWSASCGSYPDIIKSEETNRQIDTNTKSNSKQQSLEKANEHPKWLPDGWNVEVRIRKSGLHMGSGYKVCYIEPLKGYKFFSKPEVLRYLETVKDNSCTSQKGKQCSKIHSPNDNNCTSKKEKKCSKLHIPNDKSCISKKEKKCANMESPNVNSCSPKEEKKCCNTDSSSRAPKKEKNCSNMVSPTDVVVEKSIVEDLPPGWVKELKITKNSKGTRKDPFYIDPVSGYVFRSKKDVLRYLESGDIRSCAFKPSKRQIQDEDNITPPPAAKRQKLKQSALMQQLSASTEILDKSSLELPNANSPRKEQNANLSSRTMVASVAIGESVPKMHPLDNGAANSSEVKKTSDPGRSALLKNESLKESAKVLSADDVQEKGHVLNTTENGNEKNYSNHSISKIRKEFNVRQRSSPRLAGGKSVQLANNVINEQTLQVPKRNLRSRNTLDLDISVDQAASKEQPHPQETDKIEDNKSGIQISSNKSGKKKGYHLPCRASKRLAAIEHESINSKVDLQQSVLGAVTTVLADKGKVANKKKKSEPRLEKRQNEEMDDEKSEPQLSFAYHYSWSDPNLENAINALTGVLPPADSIPNTVSETDISTLVDNVTGRSATTIPETDVQKTLVGNVTGRNATAVHEIDIHKTSVDNVIGRSATTVPETNIQKTSVENVTGRSASTVPETDTQKILVDNVMGSSATTIPENDVNKTVVENDLGISISTVPETDIQKTLVENDLGISISTVPETDIQKTLVDTVTSRDSENNVVDTVTGSKDRKSQVRSNKPKRKKELKVPMRLSKRLAGLEPELLPAERALEYSTRKSCKEEPTATVTLTNGVSDHHNDAGEETKLTLPASDSLKTDELAESLKLSEKSYDCLTDHKEQLKKVEAENVGDVISEPQLPLPFGDSWSDPCLEFAIKTLTGAFPDDAGADIMPALPPGFDNPPYKQAHGSVFTNINQEAHDNLNQSKNKNENMVSQPELRTGSTSYENALNFTTRESYVDQGNIIRNLDGEPRHTGNITQPVDHCRNVNTPTHEQPLKQNGLAVEGGIVTTEQQLFETGTVNHDNSELQYCAPFMNSWSDPCLEFAFKTLTGVIPVEENLTLQGCFPEPANCHERRDGVSMLPDFRSSSFSQSDFSFLHDTGVKSMPGQQSSVSSSFLPLEKTSLPGFAGVDPQTHFSQCNNNFQKR	1213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g01129	1213	PANTHER	OS04G0193200 PROTEIN	48	623	IPR038945	-
	Spst3g01129	1213	Pfam	Methyl-CpG binding domain	73	139	IPR001739	GO:0003677
	Spst3g01129	1213	Pfam	Methyl-CpG binding domain	231	277	IPR001739	GO:0003677
	Spst3g01129	1213	Coils	Coil	982	1002	-	-
	Spst3g01129	1213	MobiDBLite	consensus disorder prediction	51	76	-	-
	Spst3g01129	1213	MobiDBLite	consensus disorder prediction	284	307	-	-
	Spst3g01129	1213	SUPERFAMILY	DNA-binding domain	230	281	IPR016177	GO:0003677
	Spst3g01129	1213	ProSiteProfiles	Methyl-CpG-binding domain (MBD) profile.	221	288	IPR001739	GO:0003677
	Spst3g01129	1213	MobiDBLite	consensus disorder prediction	358	385	-	-
	Spst3g01129	1213	MobiDBLite	consensus disorder prediction	559	586	-	-
	Spst3g01129	1213	MobiDBLite	consensus disorder prediction	325	346	-	-
	Spst3g01129	1213	Gene3D	-	191	319	-	-
	Spst3g01129	1213	Gene3D	-	46	176	-	-
	Spst3g01129	1213	MobiDBLite	consensus disorder prediction	483	518	-	-
	Spst3g01129	1213	SUPERFAMILY	DNA-binding domain	61	132	IPR016177	GO:0003677
	Spst3g01129	1213	ProSiteProfiles	Methyl-CpG-binding domain (MBD) profile.	69	138	IPR001739	GO:0003677
	Spst3g01129	1213	MobiDBLite	consensus disorder prediction	1	23	-	-
	Spst3g01129	1213	MobiDBLite	consensus disorder prediction	792	813	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g01129	Spst-Chr3	14628467	14637793	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g01129	-		-	gmx:100782433	1723.75

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g01129	3	14628467	14637793	Spst3g01129	3	14628467	14637793	ECH
	Spst2g00325	2	2530285	2540005	Spst3g01129	3	14628467	14637793	PCT