Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00502 ATGGCAAGGCCTAATCAAGAGGCGGTTGAGACTTTCGTCAGCATCACTGGTTTGCCTGAGGCAGTAGCGTTGCAAAAACTCGAGGAGCATGGAGGTAATCTCAATGAAGCAGTCAATGCACATTTTAGTGAAGGAGACAGAAATTTAATGACTGGGTATAGTCTCTTTTCCATTAGTAAGCAAGTGATTATTGAGAAACATAACCCATTTTACTGCACTCACAATAGCTCTACAGCATTTCCTCAAGATGATTTCATGGATATAGATGATCAACAGGATGCAGATATTCAGAGAATTCCTTCACTTCCAGCTTTAGCAGCAAATGTCAATCCGTTTTCTCTTCTTGATCCTACACTTGGGAGAGGTATATTTGGTACTCCTCTTGATTCAACTGTCCAGGCACCCTTTGTTACACATCCTAGGGAGGTGAGGGAGATTCCTATAGAGGTTAAGGATGGTAACCAATCCACTACTCAATCTGGTCATCCATCCATTGAAGATGTCACTGGAACTGTTGATGCCCATGGTCCAGATATCCATGGGACTGTCATAATCAACGATGAAGATGATGACTCTCCACTTGCCCAGATTGCACATCGAGATGAGCAAAACCATAACATCTTGGCTGATACCTCACTCAATACCAGTGCTAGACCTAGTGCTCCTGAATCTGAGAATTTACCAGATTATAACAACGACATAGAAGAAGAAATGCTTCGGGCAGCCATTGAGGCTTCTAAACGGGAGGCTGAGGAAAATTACAGAAGTCACAAACTTGGCAGACAAACTGACTCAACTGAATCAGGATCACAGTCAAGGCAATCGTATTTGGAGGATCCAGAGCTTGCCCATGCAGTTTCATTGTCTCTGAAGACAGCTGAGCAAGAAAAAGCATGGCGTGTACAAGGAGGAGATTCTGAATCTCCACCAGCCGGGCCATCAAAGTCATCAGAGGCTGGACCAGTGGAAGTGGCATCTAATGGAAGGTTGCAGGCAGGAAGCTTGTCCTTTCATGATGAAGCTGAAGATGTAGAGGAGCAGCCACTTGTTAGGAACAGATCTAGACATATGTCTTCAGGATCTGCAGGATCAGTCAAAGATGTTGAATTTGCTGAGGCTAGCACACTACCAAGCACAGCGCCACAGGAGACCAGTAATCCTCCTCATAATACTAATTCCTTCCCCTCTGATGAGTGGGGTGGCATATCTTCAGAGGAGCATGATGAAGCAGTAATGCTTGAAGCTGCAATGTTTGGTGGAATCCCAGAAGGTACTGGATACCAGTATGCTTATGCACCACATGAGTTTATGCAAGGTAGGGGTTCTAATCCTCGTGCCTCATATCGCCCACCTTCACCATCACTGGCAGCACAGCGTTTGATAAGGGAACAGCAGGATGATGAATATCTTGCATCATTACGAGCAGACAGAGAAAAGGAATTGAAGGCCAGAGAAGAAGCCGAGGCTGCTCTTGAAGAGGAAAGGCGGAGAGCGGAAGAAACTCTCAGGAAATTACAGGAAGAGCAGGAATTGGAAACACAATTAGCCGCCAAAGAAGTTTCCCTGCCCCCAGAACCATCATCAGATGATGATAACGCTGTTAATTTGATGGTAAAAATGCCAGATGGCAACCGTCGTGGACGCCGATTCCTAAGATCTAATAAGCTACAGTCTCTGTTCGACTTCATAGACATCGGTAGGGTGGTGAAACCAGGCAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCTTTTAGTGATGAAGAAAGTGCTTCAACCCTGGCTGAACTTGGCCTAACCAACAAGCAAGAAGCTTTGTTTTTGGAGTTAATCTGA 1836 0.4526 MARPNQEAVETFVSITGLPEAVALQKLEEHGGNLNEAVNAHFSEGDRNLMTGYSLFSISKQVIIEKHNPFYCTHNSSTAFPQDDFMDIDDQQDADIQRIPSLPALAANVNPFSLLDPTLGRGIFGTPLDSTVQAPFVTHPREVREIPIEVKDGNQSTTQSGHPSIEDVTGTVDAHGPDIHGTVIINDEDDDSPLAQIAHRDEQNHNILADTSLNTSARPSAPESENLPDYNNDIEEEMLRAAIEASKREAEENYRSHKLGRQTDSTESGSQSRQSYLEDPELAHAVSLSLKTAEQEKAWRVQGGDSESPPAGPSKSSEAGPVEVASNGRLQAGSLSFHDEAEDVEEQPLVRNRSRHMSSGSAGSVKDVEFAEASTLPSTAPQETSNPPHNTNSFPSDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYQYAYAPHEFMQGRGSNPRASYRPPSPSLAAQRLIREQQDDEYLASLRADREKELKAREEAEAALEEERRRAEETLRKLQEEQELETQLAAKEVSLPPEPSSDDDNAVNLMVKMPDGNRRGRRFLRSNKLQSLFDFIDIGRVVKPGSYRLVRPYPRRAFSDEESASTLAELGLTNKQEALFLELI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00502 611 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Vimu7g00502 611 SUPERFAMILY Ubiquitin-like 492 607 IPR029071 -
Vimu7g00502 611 Gene3D - 227 302 - -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 296 408 - -
Vimu7g00502 611 Gene3D - 1 45 - -
Vimu7g00502 611 Pfam UBX domain 530 609 IPR001012 GO:0005515
Vimu7g00502 611 MobiDBLite consensus disorder prediction 247 278 - -
Vimu7g00502 611 Pfam UBA-like domain 6 46 - -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 151 187 - -
Vimu7g00502 611 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 235 253 IPR003903 -
Vimu7g00502 611 SMART ubx_3 526 610 IPR001012 GO:0005515
Vimu7g00502 611 ProSiteProfiles UBX domain profile. 529 607 IPR001012 GO:0005515
Vimu7g00502 611 PANTHER FAS-ASSOCIATED PROTEIN 11 610 - -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 247 262 - -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 151 166 - -
Vimu7g00502 611 Gene3D - 530 610 - -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 336 352 - -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 207 227 - -
Vimu7g00502 611 Coils Coil 470 515 - -
Vimu7g00502 611 CDD UBA_Ubx1_like 6 42 - -
Vimu7g00502 611 CDD UBX 535 609 - -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 201 231 - -
Vimu7g00502 611 SMART uim 277 296 IPR003903 -
Vimu7g00502 611 SMART uim 234 253 IPR003903 -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 375 399 - -
Vimu7g00502 611 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00502 Vimu-Chr7 5283298 5287328 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00502 - - vum:124835115 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00502 7 5283298 5287328 Vimu7g00502 7 5283298 5287328 ECH