Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2689 ATGGCTGAACTTGTTGCCATGACGTCTGAAGAAGCCAATACACAGATCAACAGTAACACAGAATGCATTCCTAAACAAGAAATTGTAGAGAAAGCTATTGAGCGTCCTGAATGGTTACCTGATGGGTGGACCATGGATGTCAGAACCCGAAAAAGCGGCTTGCATATGGGATCTGGATATAAGTGTTACATTGATCCATTGAAGGGATACAAATTCTACTCCAAACCAGAGGTATTACGATATCTTGAAACCATAAAGGGCAACAGCTGCACTCCCAAGAAGCCAAAAAAAGAGAACAGCTGCAATCCCAAGAAGGGGAAAAAGGAGAACAGCTGCTCTCCCAAGGAGGAGAAAAAGGACGACAGCTGCACTCCCAAGAAGGGGAAGAAATGCCTTAACATAGATTCTCCAAGCAATGTTGTGATTGAGAAGTCCATTGCAGAGGATTTACCACCTGGATGGATAAAAGAAGTAAAGATTAAAAAGAATGCCAATGGCAGCATTAGGAAAGATCCGTTTTATAAAGATCCAGTGAGTGGATATGTATTCCGTTCCAAGAAGGAAGTACAGCGGTATCTTGAGTTTGGAGCTGAACCTAATAGAAGACAAATCCAGGTTGAAGACAAGATAACTCCATCACCTGGGGCTAGAAGACAGAAACTGAAACAATCTGCACCCAAACAACAGCATTTTGCAGGCAAAGAAATATTTGATAAAAGTGGCTTAGAACTGCCAGATCCTAACAGCTCAAGAAAAGGCCAAGATGTGAACGTCCAATCCAGAATGATGGTTGCTCCTGTTCCCAGAGGTGAATCTGGTGTGAAGATGCATTCACTTGAGGATGGAGCTGAAAACCTCTCTGAAATGAAGAAAATATCTCATCCAGATGATATGCAAGAGAAGGAGCATACTGGGAATATGATGGAGAATGCTAATGAAAAGAATCACAGTAGCCCTAGCATATCCAAAAAGGAGTTCAATGTGCCTCACCGGTTTTCACCACGACTTGCTGGGATTGAACCTGTCCAGTTGGCTGACAATATGATCAATGAACAGAATCTTCAAGTTCCAAAAAGAAACGTGAGGAAAAATAAGACAACTCTAGATGCTGATTTGGAAAATAAATCATCTCATCATGTCAATGGAGTCCCAGAAACTGAGCATGCACATAAAATGCAACAAGAGGTGATGAACACAAGCAACAATCGTTCTGAAGACCAAGCTGTTGCTGTAGAGAAACCACATAAGCTAGAAACAGATAAAATAGATGACAAGAAGCCAGAAATTCATACAAACTCAATCAAATCCAACAACAAGAGAGACCACCATATTCCTCGTCGGGCTTCAAAGCGACTCGCTGGATTTGATAATGAGCTGATGAACAGCTCCATATCCTGTGAAAAGACTCCCAAATATGAAAGCAAAAGTTCAAAAGATGAGATCAATGCAGAGTCGCAACAAGGTGAGGGTGGCCTAGCTACAAAGCTTGCAGATCATGCACCAATAAATGGAGAGTCAGCTAACAAAAGAAGAAAAACTTCTAAAATTCCATCTATTATGGATGATCAACGGGAGAAACTTAAAGGTGAAGAAATGGATGATGAGAAATCAGAACCTCAGATGTCATTTGCATCCCACTACTCTTGGTCCGATCCAAGTGTGGAATATGCAATTAATTCCCTGACGAGTGTGTTTCAAGTTGAGGATTCAGTTGATACTGGACCCACTACAGTCCCCCAAACTGATATTCAAAATAAATTGTTCGACAATGCTACAGGAAGAAGCAGGGACAGAAATGACCCACTGGTACGTTCAAATAAATCCAAGAAGAAAAAAGAGTTCAAAGTGCCTATGCGGGTATCAAAGCGACTTGCTGGCCTTGAACCTGATGTTCGGCCTTCCGAAAGAGCTGTTGAATATGCCACTAAAAAGACATGCAAGGAAGAACCAATTGCACCTGCAACTGCACCTGAAAGTTTAACTGACCGGGCACCTGACCATCTTGACACAGAGGAAGAAATCAAGCTTACATGTCATGCATCTCACAGTTCAAGAACAGAAGTACTAGTAGAATCATCAAACAAGAGTGACAAGTCATATGATGCCCAAACTGTTCCTGAGGAACAATTGCAGAAAGTTGAAGCTGAAAATATTGGTGATGAGAGCTCAGAGCCACAGCTCCCTCAGCCATTTGGGGAGTCTTGGTCAGATCCGTGCCTGGAATTTGCATTCAAGACTCTCACCGGTGCTTTGCCATTTGATGCTGACACAGATGCCTTGCCGGTCATAACTCCTGATGTTAGTGACCTGCCAAATAAGGAATTGCATGAGAGTGTGGTGATGAGCATCAGTGAAGAAGCTCATTATAACTCAAACCAATCCCAGAACAAGAAAGAAGCCAATATGATTAGCCAGCCTTCAGAACTACTCCCGAGGGAACCTGAGTTGAGGATTGGCTCTAAATTATGTAAGAATGCTCCTAATTTTATAGTCAAAGACTCTTGTGGTGATGAAGGCTTTATTACAAGGAATTTAGATGGAGGATCTGTACATATGGATGTTGGAAACGTTACACAACATGTGCATCATTCTAGAAATATGAATCCATTAATACCCAAAGAGCCATTGAAGGAAAATGGACAGGCTGTTCATGAGGGTGAATCTGTTATAATTGGGCAACCACAACTTGAAACTGCAACTATAAACCATGATAATTCTGAATCACAGTTTTGTGCTTCGTTTATGAATTCTTGGTCCGATCCATGCCTAGAATTTGCATTCAAGACTCTTACTGGTGTGATACCAGTAGACGAAAATTTAGCAATTCAAGGATGTTTCCAACAACCTGCTAACTGTCATAACCAGACAGATGGCGTCTCAATGTTGCCGGATTTTGGACCTTCCTGCTTTTCTCAAAATGATTTCCCATTTCACAATGATGTAGGCGTAGATTCCATTCCAGGGCAGCAGTCATCGATGAGCAGTCCATTCCCACCCATGGAAAAAGGGAGCCTACAAAGTTGTCCTGAAGTTGATCCTCAAAAACAGTATTCTCAGTGCAGCAGGAATTTTCAATGGTAA 3081 0.4184 MAELVAMTSEEANTQINSNTECIPKQEIVEKAIERPEWLPDGWTMDVRTRKSGLHMGSGYKCYIDPLKGYKFYSKPEVLRYLETIKGNSCTPKKPKKENSCNPKKGKKENSCSPKEEKKDDSCTPKKGKKCLNIDSPSNVVIEKSIAEDLPPGWIKEVKIKKNANGSIRKDPFYKDPVSGYVFRSKKEVQRYLEFGAEPNRRQIQVEDKITPSPGARRQKLKQSAPKQQHFAGKEIFDKSGLELPDPNSSRKGQDVNVQSRMMVAPVPRGESGVKMHSLEDGAENLSEMKKISHPDDMQEKEHTGNMMENANEKNHSSPSISKKEFNVPHRFSPRLAGIEPVQLADNMINEQNLQVPKRNVRKNKTTLDADLENKSSHHVNGVPETEHAHKMQQEVMNTSNNRSEDQAVAVEKPHKLETDKIDDKKPEIHTNSIKSNNKRDHHIPRRASKRLAGFDNELMNSSISCEKTPKYESKSSKDEINAESQQGEGGLATKLADHAPINGESANKRRKTSKIPSIMDDQREKLKGEEMDDEKSEPQMSFASHYSWSDPSVEYAINSLTSVFQVEDSVDTGPTTVPQTDIQNKLFDNATGRSRDRNDPLVRSNKSKKKKEFKVPMRVSKRLAGLEPDVRPSERAVEYATKKTCKEEPIAPATAPESLTDRAPDHLDTEEEIKLTCHASHSSRTEVLVESSNKSDKSYDAQTVPEEQLQKVEAENIGDESSEPQLPQPFGESWSDPCLEFAFKTLTGALPFDADTDALPVITPDVSDLPNKELHESVVMSISEEAHYNSNQSQNKKEANMISQPSELLPREPELRIGSKLCKNAPNFIVKDSCGDEGFITRNLDGGSVHMDVGNVTQHVHHSRNMNPLIPKEPLKENGQAVHEGESVIIGQPQLETATINHDNSESQFCASFMNSWSDPCLEFAFKTLTGVIPVDENLAIQGCFQQPANCHNQTDGVSMLPDFGPSCFSQNDFPFHNDVGVDSIPGQQSSMSSPFPPMEKGSLQSCPEVDPQKQYSQCSRNFQW* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2689 1026 MobiDBLite consensus disorder prediction 591 607 - -
Dod04g2689 1026 SUPERFAMILY DNA-binding domain 148 194 IPR016177 GO:0003677
Dod04g2689 1026 CDD MBD 150 194 - -
Dod04g2689 1026 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 140 213 IPR001739 GO:0003677
Dod04g2689 1026 MobiDBLite consensus disorder prediction 680 708 - -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 213 258 - -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 571 616 - -
Dod04g2689 1026 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 29 108 IPR001739 GO:0003677
Dod04g2689 1026 MobiDBLite consensus disorder prediction 984 1001 - -
Dod04g2689 1026 Gene3D - 146 200 - -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 408 439 - -
Dod04g2689 1026 SUPERFAMILY DNA-binding domain 32 92 IPR016177 GO:0003677
Dod04g2689 1026 MobiDBLite consensus disorder prediction 983 1014 - -
Dod04g2689 1026 Pfam Methyl-CpG binding domain 33 94 IPR001739 GO:0003677
Dod04g2689 1026 Pfam Methyl-CpG binding domain 148 199 IPR001739 GO:0003677
Dod04g2689 1026 PANTHER OS04G0193200 PROTEIN 430 586 - -
Dod04g2689 1026 PANTHER OS04G0193200 PROTEIN 13 429 - -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 504 540 - -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 456 470 - -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 399 543 - -
Dod04g2689 1026 Gene3D - 7 131 - -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 681 706 - -
Dod04g2689 1026 PANTHER OS04G0193200 PROTEIN 13 429 IPR038945 -
Dod04g2689 1026 PANTHER OS04G0193200 PROTEIN 430 586 IPR038945 -
Dod04g2689 1026 PANTHER OS04G0193200 PROTEIN 586 1020 IPR038945 -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 571 590 - -
Dod04g2689 1026 MobiDBLite consensus disorder prediction 91 128 - -
Dod04g2689 1026 PANTHER OS04G0193200 PROTEIN 586 1020 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2689 Dod-Chr4 50859714 50865054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2689 - - aprc:113854032 1164.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2689 04 50859714 50865054 Dod04g2689 04 50859714 50865054 ECH
Dod02g1077 02 13440181 13449238 Dod04g2689 04 50859714 50865054 PCT