Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00615 ATGGAAAGCCCTGATATTGAAAAGTCTGAAGAAACCAAAACACAGATTAACAGTAACACAAATTGTAATTCTAAACAGCAGAGTGTAGAAAATGCTAACGAACATCCTGAATGGTTACCTGATGGCTGGAACATGGAAGTCAGAATCCGTAAAAGTGGTGTACACATGGGATCTGGATACAAGTGTTACATCGAACCGTCAAAAGGATACAAATTCTTCTCCAAACCAGAGGTATTACGATATCTCGAAACTGTAGAGGATAGCAGTGGCACTTCCAAGAAGGGGAAGAAATGTAGTAAGATAAACACTCCAAATGACAAGAGTTGCACTTCCAAGGAGAAGAAATCCAGTAAAATGCAGACTCCAAACAACAAGAGCTGCAGTTCCAAGAAGGAGAAAAAATGTGCTAGCGTGGAGTTTCCAAATGACAACAGTTGTACTCCCAAGGAGGAGGAGAAGGGCAATAATATGGATTTCCCAAACAACAACAGTTGTGCTCCCAAGAAGGAGAAGAATGGGAGTAACTTGGATTCTCCCAACGGTAACAGTTGCACGTCCAAGAAGGAGAAGATAGGCACTAACATGGATTCTCCAAAGGACAGCAGTTGCACTCCGAAGAAGGAGAAGAATTACAATAACATGAATTCTCCAATTGATGTTATGATTGAGAAGTCTATTCCGGAGGATTTACCGCCTGGGTGGGTAAAAGAATTGAAGACTACGAAGAATGGCAAGGGCATTCGGAAAGATCCGTTTTATATTGATCCAGTGAGTGGATATGTATTCCGCTCTAAGAAGGATGTACAGAGGTATCTTAAATCTGGTGATATACGGTCATGTGCCTTTAAGCCAAGTAGAAGACAAATCCAAGATGAAGACAACATAACTTCACCACCTGCTGCCAAGCGTCAGAAACTGAAGCAGTCTGCACCCACGCAACAGCTTTCCGCAGGTGATTCTATTGCAAAGATGCATTCACCAGAAGATGGAGCTGCAAACTCATCTGAAGTGAAGAAATCATCTGACCCAGGTAGGTCAGCACTTTTGAAAAATGAATCCTTGAAGGAATCAGCAAAAGCACTTTTTGGAGATGATTTGCAAGAGGAGGAGCGTGCTGTGAATGCAACGGAGAATGGTAACGAGAAAAATCACGGTAAACAAAGCATATCCAAAATCAGGAAGGAGTTCAATGTAAGTCAGCGGTCATCACCGAGACTTGCTGGAAGTAAATCTGTACAGTTGGTAAACAATGTGATCAATGAACAGACTCTTCAGGTTCCAAAAAGAAACTTGAGGAAAAGTAGAAACACTCTAGATGTTGATATTTCTGTGGACCAATCAGCTCCTAAAGAACAACCACATGAGCAAGAAACAGATAAAATAGAAGACAATAAGCCAGAAATTCAAATCAGCTCAAACAAATCAGGTAAAAAGAAAGAGCACCACCTTCCTCGTCGGGCTTCAAAACGATTAGCTGCTATTGAGCATGAGTCAATGAACTCCAAAGTGGAATTGCAGCAAAGTGAGTGTGGGCCAGTGACAATGGTTGCTGATCAAGCCCCAATAAATGGCAAGTCAGCAAATAAAAGGAAAAAGTCAGCACCTCGTCTGAAGAAAAGTGGAAAAGAAGAGATGAATGATGAGAAAACAGAACCTCAGCTGTCCTTTGCATATCACTATTCATGGTCCGACCCAAGCTTGGAATATGCAATCAATGCCCTCACTGGTGTGTTACCACCAGCTGATAATATACCCAGTACTGTTGCCGAAACTGATATTCAAAAACCTTTGTTTGACAATGTTACTGGAAGAAGTGCCACTGCAATCCCTGGAACTGATGTTCAAAACACTTCAGTTGGTAATGTTTTAAGGGACACCACTGCAGCCCCTGAAACTGATATTCAAAAAGCTTCAGTTGACAATGGTATGGGAAGGAGCACCACTGAAGTCCCTGAAACTGATATTCGAAAAGCTTCAGTTGACAATGGTACGGAAAGGAGCACCACTGCAGTTCCTGATACTGATATTCAAAAAGCTTCAATTGACAATGGTACGGGAAGTGGCACCACTGCAGTCCCTGATACTGATATTCAAAAAGCCTCAGTTGACAATGGTACGGCAATTAGCACCACTGCAGTCCCTGATACTGATATTCAAAAAGCTTCAGTTGACAATGGTACGGGAAGGAGCCCCACTGCAGTTCCTGAACCTGATATTCAAAGCACTATGGCCAGAAGTGCCACTACAATTCCTGACTCTCATCTTCAAAAAACTTTGATTGACAGTGTTAAGGGAAGTAGCTCCACTACAATCCCTGAAAATGATCAAAAGACGGTGATTGAAATGGAATCGGCAAGAAGCACCTCTACAGGACCTGAAACTGATATTCAAAAGTCTTTGATTGACAGTGTTACAGGAAGCAGGTATAGAAAATCCCAGGTACGTTCTAATAAACCCAAGAGAACGAAAGAGCTCAAAATACCTGTGCGATTATCAAAGCGACTTGCTGGCATGGAACCCGAGTTACCGCCTGCTGAAAGAGCTCTTGAATATTCCACTAGAAAATCATGCAGAGAAGAACCAACTGCCACTGATACTCTAACTAATGGAGTGTCTGATCATCACAACGCTGGGGAAGAAACCAAGCCTACTCTTCTTCAAGCTTCTGACAGTTTGAAAACAGAAGTACTTGGAGAATCATTAAAACGGAGTGAGAACTCATATGATGCCCAAACCGATCACAAGGAACAATTGAAGAAAGTTGAAGCTGAAAATGTTGGTGATGTCAGATCAGAGCCAAAGCTCCCCTTACCGTTTGAGGACTCTTGGTCAGATCCATGCCTAGAATTTGCCATCAAGACACTCACCGGTGCTTTTCCACTTGATGCTGGTGGAGACATAATGCCTGCTTTGCCTCCTGGCTTTGATAATCCGCCATATAAGCAAGTGCATCGAAGTGTGGTGACAGACATTAATCAAGAAGCTCATGATAACTCGAACCAACCCTCGCACAATAAGGAGCTTAATATGGTTATTCAACCTGAGTTGAGGACCGGCTCCATCTCTTATGAAAATGCTCCTAACTTAACAACTAGGGAATCTTATCTTGATCAAGACAACATACTTAAGAATTTGGATGGGGAACCCAGTCTCACTGGAAACATAACACAACCTTTGCATCATTCTTGGAATATAAACACACTAGCACATGAAGAGCCATTAAAGCAAAATGGACAGCCTGTCGAAGGTGGAATTGTTACAACGGAGCAACAATTAATTGAAACTGGAGCTGTAAACCATGACAATTCCGAGTTACAGTATTGTGCTCCGTTTATGAATTCTTGGTCAGACCCATGCTTAGAATTTGCATTTAAGACTCTTACAGGCGTGCTACCAGTAGAGGAAAATTTAACACTCCAAGGATGTTTCCCGGAACCTGCTAACTATCATGAACGGAGGGATGGTGTCTCATTGTTGCCAGATTTCAGATCATCTAGCTTTTCACAAAGCGATTTCTCGTTTTTCCATGATACAGGGGTTAAGTCCATGCCAGGGCAGCAGTCATCAGTAAGCTCTTCATTCCTACCCTTGGAGAAAACAAGTCTTCAAGGTTTCGCGGGAGTTGATCCTCAAACACACTTTTCTCAGTGCAACAATAATTTTCAAAGAAGGTAA 3675 0.4223 MESPDIEKSEETKTQINSNTNCNSKQQSVENANEHPEWLPDGWNMEVRIRKSGVHMGSGYKCYIEPSKGYKFFSKPEVLRYLETVEDSSGTSKKGKKCSKINTPNDKSCTSKEKKSSKMQTPNNKSCSSKKEKKCASVEFPNDNSCTPKEEEKGNNMDFPNNNSCAPKKEKNGSNLDSPNGNSCTSKKEKIGTNMDSPKDSSCTPKKEKNYNNMNSPIDVMIEKSIPEDLPPGWVKELKTTKNGKGIRKDPFYIDPVSGYVFRSKKDVQRYLKSGDIRSCAFKPSRRQIQDEDNITSPPAAKRQKLKQSAPTQQLSAGDSIAKMHSPEDGAANSSEVKKSSDPGRSALLKNESLKESAKALFGDDLQEEERAVNATENGNEKNHGKQSISKIRKEFNVSQRSSPRLAGSKSVQLVNNVINEQTLQVPKRNLRKSRNTLDVDISVDQSAPKEQPHEQETDKIEDNKPEIQISSNKSGKKKEHHLPRRASKRLAAIEHESMNSKVELQQSECGPVTMVADQAPINGKSANKRKKSAPRLKKSGKEEMNDEKTEPQLSFAYHYSWSDPSLEYAINALTGVLPPADNIPSTVAETDIQKPLFDNVTGRSATAIPGTDVQNTSVGNVLRDTTAAPETDIQKASVDNGMGRSTTEVPETDIRKASVDNGTERSTTAVPDTDIQKASIDNGTGSGTTAVPDTDIQKASVDNGTAISTTAVPDTDIQKASVDNGTGRSPTAVPEPDIQSTMARSATTIPDSHLQKTLIDSVKGSSSTTIPENDQKTVIEMESARSTSTGPETDIQKSLIDSVTGSRYRKSQVRSNKPKRTKELKIPVRLSKRLAGMEPELPPAERALEYSTRKSCREEPTATDTLTNGVSDHHNAGEETKPTLLQASDSLKTEVLGESLKRSENSYDAQTDHKEQLKKVEAENVGDVRSEPKLPLPFEDSWSDPCLEFAIKTLTGAFPLDAGGDIMPALPPGFDNPPYKQVHRSVVTDINQEAHDNSNQPSHNKELNMVIQPELRTGSISYENAPNLTTRESYLDQDNILKNLDGEPSLTGNITQPLHHSWNINTLAHEEPLKQNGQPVEGGIVTTEQQLIETGAVNHDNSELQYCAPFMNSWSDPCLEFAFKTLTGVLPVEENLTLQGCFPEPANYHERRDGVSLLPDFRSSSFSQSDFSFFHDTGVKSMPGQQSSVSSSFLPLEKTSLQGFAGVDPQTHFSQCNNNFQRR 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00615 1224 MobiDBLite consensus disorder prediction 448 477 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 291 320 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 357 377 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 426 486 - -
Viun3g00615 1224 Gene3D - 5 136 - -
Viun3g00615 1224 Gene3D - 191 319 - -
Viun3g00615 1224 PANTHER OS04G0193200 PROTEIN 730 1218 IPR038945 -
Viun3g00615 1224 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 220 287 IPR001739 GO:0003677
Viun3g00615 1224 MobiDBLite consensus disorder prediction 520 550 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 13 33 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 84 214 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 631 648 - -
Viun3g00615 1224 Pfam Methyl-CpG binding domain 230 276 IPR001739 GO:0003677
Viun3g00615 1224 Pfam Methyl-CpG binding domain 32 87 IPR001739 GO:0003677
Viun3g00615 1224 MobiDBLite consensus disorder prediction 662 696 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 1 42 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 157 200 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 282 409 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 392 409 - -
Viun3g00615 1224 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 29 108 IPR001739 GO:0003677
Viun3g00615 1224 MobiDBLite consensus disorder prediction 851 881 - -
Viun3g00615 1224 CDD MBD 38 91 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 629 696 - -
Viun3g00615 1224 SUPERFAMILY DNA-binding domain 15 89 IPR016177 GO:0003677
Viun3g00615 1224 CDD MBD 230 274 - -
Viun3g00615 1224 MobiDBLite consensus disorder prediction 708 739 - -
Viun3g00615 1224 SUPERFAMILY DNA-binding domain 226 280 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00615 Viun-Chr3 3777610 3784870 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00615 - - vra:106768326 2074.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00615 3 3777610 3784870 Viun3g00615 3 3777610 3784870 ECH
Viun2g02557 2 31683556 31692445 Viun3g00615 3 3777610 3784870 PCT