Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0449 ATGGGAAAACCTAAAGTTAAAGAGTCTGAAGAGACCGGTAGACAGATCAACAGTGACACAAAATGCAATTCTAAACAACAAGAAGTTGTAGAGAATGCTAATGAACGGCCGGATTGGTTACCTGATGGCTGGAGTGTGCTAGTCAGAATTCGGAAAAGTGGTACACAAATGGGATCTTCGTATAAGTGTTATATTGATCCGTTGAAAGGACTCAAATTCTTCTCCAAACCTGAGGTATTGCGACACCTTGAAACTGTAAAGGACAGCAACTGCACTCCCGAGAAGGGGAAGAAACGCACTAATATGCATTCTCCAAGCAACATCCTTGACAACCTAACCTCAAAGGACAGCAGCTGCACTCCCAAGAAGGAGAAGAAGTGTACTAATATGCCCTCTCCAAGCAAAATCCTTGACAACATAACCTCAAAGGACAGCAGCTGCACTCCCAAGAAGGAGAAGAAGTGTACTAATATGCCCTCTCCAAGCAAAATCCTTGACAACATAACTACAAAGGACAGCACCTGCACTCCCAAGAAGGAGAAGAAATGCACTAATATACCTTCTCCAAGCAATATCATTGACAGCATAACTACAAAGGACAGCACCTGCACTCCCAAGAAGGACAAGAAGTGCACTAATATGCCTTCTCCAAGCAACATCATTGACAACATAACTACAAAGGATAGCACCTGCACTCCCAAGAAGGAGAAGAAGTGCACTAATATGCCTTCTCCAAGCAACGTTGTGGTTGATAAGTCCACTGTGGAGGATTTACCACCTGGATGGATTAAAGAAGTAAAGATTAGGAAGAGCCGCAACAACACTAAGAAGGATCTGTATTATAAAGATCCAGTGAGTGGATATGTATTCCGTTCCAAGAAGGATGTACTGCGATATCTTGAATCTGGAGATATAGGTTCATGTGTATTTAAACCACACAGAAGTCAAATCCAAAATGAAGACAACTTAACTCCTTCGCGTGCTGGTAAGAGACAGAATCTGAAGCAGTCTGCATCTAAGCAACAGCTTTTTGTTGCCAAAAAACTAGTTGATAAAAGCAGCTTAGAATCGGCAGATGTTAGCAACTCGAGGAAAGGGCAAGATAGGGATGTACCATCTGGAATCAATGAAAACAAGTGCGAGTCTGTTGTAAAGGTGCATTCACCAGAGGATGGAGCTGCAAACCGTCCTGAAATACCTGACCCAGGTAGCTCAGCTGTTTTGAAATATGAATCAATGAAAAAATCGGAAAATTGTGCAGATGGTGTGCATGAGAAGGAGCACGTTCTAAATATGATGGAGAATACTAATGATAAGAATCACAACAACCACAGAACATCCAAAAACAAGGAGTTCAATGTGCGTCATCGTTCTTCACCAAGACTTGCTGGGGCTGTACCTGTCCAGATGGCCAACAATGTGATCAATGAGCAGACTCTTCAAGTTCCAAAAAGAAGCTTGAGGAATAGTAGATCCACTCAAGATGTCGATATGGGAAGTAAATCATCCCAGCATTTCAACGGTATCCCAGATAAAATGCAGCAAGTGGCAGTGAACACAGGCACCGATCTTTCTGCAGACCAAGTAGTTTCCAAAGAACAACATCAGCTGGAAAGAGATAATACAGAAGACAATAAGCCAGGAATTCGTGCTAACTCAAACAAATCAAGAAAGAAGAAAGGGCACTGCGTTCCTCGTCGAGCTTCAAACCGACTAGCTGGATTGAAGCAAAGTGAGGGCAGGCCAGTTACAGAGCTTGTAGATCATGCACCAATAAATGGAGAGTCTGGAAGTAGAAGAATAGAATCTCCCAAAATCCCACCTACTGCAGACAATCAACTGGAGAAACATGAAGATGGAGAAATGGAAGATGAGAAATCAGAACCTCAGCTGTCCTTTGCATTCCACTACTCATGGTCTGACCCAAGTGTGGAATTCGCAATCAATACCCTCACAGGTGCGTTACCACCTGCTGAGAGTTCAGTTGTTAATGGACTGACCACAGTCCCTGAAACTGATATTCAAAAAACTTTGTTTGACAACGTTACAGCAAGAAGCAAGGACAATGAAAACAATTCAGTTGATAAAGGTCCCACTACAGTCCCTGCAACTGATATTCAAAACGAAGTGTCTGGCAATGTTACAGGAAGAAGCAGGAACAATCAAAACAATTCAGTTGATAATGGACCCACAACCATCTCTGAAACTGATATTAATAAAACATTGTTTGACAATGTTACAGCAAGAAGCCAGGACAATCAAAACAATTCTCTTGACAAAGGTACAGGAAGCAGGGACAGAAGCCCACAAGTACATTCAAATAAATCCAAGAGAAAGAAAGAGGTCAAAGTGCCCATGCGGTTGTCAAAGCGACTTGCTGGTGTTGAACCCGATGTTCCGCCTTCTGAAAGAGCTCTTGAATATTCAACCAAAAAATCACGCAAAGAACCAACTGCTACTGCAACTCCAATTTTAACTGACAGAGCCTCTAATTCTGGCCATCTTGATGCTGGGGGGAAAACCAAGCATATGAATACATCTGACAGTTTGGAAACAGAAGTCCTTGCAGAATCATCAAACAAGAGTGAGAAGTCATACAATGCCCAAACTGTTCGCAAGAAACAACTGCAGCAAGCTGTAGCTGAAAATATTGGTGATGAGAGATCAGAGCCACAGGTCTCCTTACCATTTGGGGACTCTTGGCCTGATCCATGCCTAGATTTTGCATTCAAAACTCTCTCTGGCGCTTTACCAGTTGATTCTGCTACAGACATCTTGCCTGTTATGACTCCTGCTGTTTATGAGCCGCCAAATAAGGAATTGCATGGGAGAATGGTGATGGGCGTCAATGGAGAAGCTCACAACAACACAAATCAATGCCGGAACAAGAAAGATGTTAATATGGATGGCCAGCCTCCAAAACCATTCCATGGGCAACCAGAGTTAAGGACCAGTTTCACATCTTATGCAAATGCTCCTAAATTTACATCTGGAGAATCTCATAATGATGAAGCCAACATGATAAGGGGTTGGAATGGGGAACCCCTGCACTTTGAAGCTGGAAATGGGAAACAACCTGTGCATCATCCCAGGGGAAGTATACACACACAAGTACATGGAGAACCATTACAGAAGAATGGTCAGGTTGTTGAGGGTGAATTTGGTACAGCAGCGCGACCACCTCCTCAAACTGAAACATTTGACCTAAACCAGGATAATACTGAATTTGAGTTTTGTGCTTCATTTATGAATTCTTGGTCAGAAGACCCATGTCTAGAATTTGCATATAAGACACTTACAGGTGAGATTCCAGTAGAGGAAAATGTAGCAACTCAAGGATGTATCCAGCAACCTGCCAGCAGGAATGAGAAAAGAGATGACGGTTTAACTTTACCAGATTTTGGATTTTCCAGCTTTTCGCAAAGTGACATCTCATTTCAGTATGATATAGGAATGAAGTCCATGCCAGGGCAGCAATCGTCATCAATGAGCTCTTCATTCCCATCCACGGAAAACGCTAGCCAGCAAGGTTATCCTCCTGGATTTGGTCCTCAAAAATACCCTCCTGGATTTGATCCTCAAAAATACCCTCCTGGATTTGTTCCTCAAAAATACCATCCTCAGTACAATAAGAATTTTCAAAGTAGGTAA 3651 0.4256 MGKPKVKESEETGRQINSDTKCNSKQQEVVENANERPDWLPDGWSVLVRIRKSGTQMGSSYKCYIDPLKGLKFFSKPEVLRHLETVKDSNCTPEKGKKRTNMHSPSNILDNLTSKDSSCTPKKEKKCTNMPSPSKILDNITSKDSSCTPKKEKKCTNMPSPSKILDNITTKDSTCTPKKEKKCTNIPSPSNIIDSITTKDSTCTPKKDKKCTNMPSPSNIIDNITTKDSTCTPKKEKKCTNMPSPSNVVVDKSTVEDLPPGWIKEVKIRKSRNNTKKDLYYKDPVSGYVFRSKKDVLRYLESGDIGSCVFKPHRSQIQNEDNLTPSRAGKRQNLKQSASKQQLFVAKKLVDKSSLESADVSNSRKGQDRDVPSGINENKCESVVKVHSPEDGAANRPEIPDPGSSAVLKYESMKKSENCADGVHEKEHVLNMMENTNDKNHNNHRTSKNKEFNVRHRSSPRLAGAVPVQMANNVINEQTLQVPKRSLRNSRSTQDVDMGSKSSQHFNGIPDKMQQVAVNTGTDLSADQVVSKEQHQLERDNTEDNKPGIRANSNKSRKKKGHCVPRRASNRLAGLKQSEGRPVTELVDHAPINGESGSRRIESPKIPPTADNQLEKHEDGEMEDEKSEPQLSFAFHYSWSDPSVEFAINTLTGALPPAESSVVNGLTTVPETDIQKTLFDNVTARSKDNENNSVDKGPTTVPATDIQNEVSGNVTGRSRNNQNNSVDNGPTTISETDINKTLFDNVTARSQDNQNNSLDKGTGSRDRSPQVHSNKSKRKKEVKVPMRLSKRLAGVEPDVPPSERALEYSTKKSRKEPTATATPILTDRASNSGHLDAGGKTKHMNTSDSLETEVLAESSNKSEKSYNAQTVRKKQLQQAVAENIGDERSEPQVSLPFGDSWPDPCLDFAFKTLSGALPVDSATDILPVMTPAVYEPPNKELHGRMVMGVNGEAHNNTNQCRNKKDVNMDGQPPKPFHGQPELRTSFTSYANAPKFTSGESHNDEANMIRGWNGEPLHFEAGNGKQPVHHPRGSIHTQVHGEPLQKNGQVVEGEFGTAARPPPQTETFDLNQDNTEFEFCASFMNSWSEDPCLEFAYKTLTGEIPVEENVATQGCIQQPASRNEKRDDGLTLPDFGFSSFSQSDISFQYDIGMKSMPGQQSSSMSSSFPSTENASQQGYPPGFGPQKYPPGFDPQKYPPGFVPQKYHPQYNKNFQSR* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0449 1216 MobiDBLite consensus disorder prediction 1152 1216 - -
Lja4g0449 1216 PANTHER OS04G0193200 PROTEIN 695 1178 - -
Lja4g0449 1216 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Lja4g0449 1216 PANTHER OS04G0193200 PROTEIN 3 667 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 681 848 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 16 30 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 1182 1196 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 681 769 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 529 629 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 355 383 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 436 457 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 1 36 - -
Lja4g0449 1216 SUPERFAMILY DNA-binding domain 257 308 IPR016177 GO:0003677
Lja4g0449 1216 MobiDBLite consensus disorder prediction 124 144 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 90 163 - -
Lja4g0449 1216 PANTHER OS04G0193200 PROTEIN 695 1178 IPR038945 -
Lja4g0449 1216 PANTHER OS04G0193200 PROTEIN 3 667 IPR038945 -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 1 15 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 552 566 - -
Lja4g0449 1216 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 248 315 IPR001739 GO:0003677
Lja4g0449 1216 MobiDBLite consensus disorder prediction 1152 1179 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 436 458 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 611 629 - -
Lja4g0449 1216 Gene3D - 220 349 - -
Lja4g0449 1216 Gene3D - 4 156 - -
Lja4g0449 1216 Pfam Methyl-CpG binding domain 258 303 IPR001739 GO:0003677
Lja4g0449 1216 Pfam Methyl-CpG binding domain 32 91 IPR001739 GO:0003677
Lja4g0449 1216 MobiDBLite consensus disorder prediction 815 829 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 316 340 - -
Lja4g0449 1216 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 30 107 IPR001739 GO:0003677
Lja4g0449 1216 MobiDBLite consensus disorder prediction 102 116 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 532 546 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 483 509 - -
Lja4g0449 1216 MobiDBLite consensus disorder prediction 1114 1134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0449 Lja-Chr4 3661510 3669920 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0449 - - lja:Lj4g3v2917630.1 2348.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0449 4 3661510 3669920 Lja4g0449 4 3661510 3669920 ECH