Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02317 ATGGCTACGCCAAATCAAGACACCATTGATACTTTTATTAGCATCACTGGTGTTTCTGAACCCGTGGCACTGCAAAAACTCCAGGAGCATGGTGGTAGTCTTAATGACGCTGTAAATGCATTTTTTAGCGAAGGAGACAGGACCAGCTCTGCCACATTTCCTCAAGGGGATTTCATGGACATAGATGATGATCCACGTGATGATGAAATTCTTAGACCTCCGTCTCTTCTATCGTCAGCCAGAAATCTCCATCCATTTTCTCTTCTTGATCCTACACTTGGCAGAGCTATATTAGATTCTCATCTCGGTTCAACAAACCAGACGCCATTTGTTACACATCCAAGAGAGGTAAGGGAGATTCCAATAGAGGTTAAGGATGGTAGTCAATCCACTCCTCAAGCCGGCCACACTCCAATCATTGAAGATGTAACTGGAACTGTTCATGCCCAAGGTTCAGATATACATGGGGGTGTTGTAATAATTGATGATGATGATGACGATACTCTACCTCCTCCGACTCATACTGTGCCTGACAGTAGTGTGATACCTAGTGCTCCCAACTTTGAGAATTTACCGGATAGTAGCAATGACATAGAAGAAGAAATGATTCGTGCAGCCATTGAGGCATCCAAACGGGAGGCTGAGGAAAATTACAGCAATCACGAACTTGGCAGACAAGTTGACTTAAGTGAATCTGGGCCTAACCCAAGGCAAACATTTTTGGAGGATCCTGAGCTGGCCCATGCAGTTTCATTGTCCCTGAAGACAGCAGAGCAAGAAAAAGCACGGCGTGTACAAGAAGGTGATGTTGGAGCACCTACAGCAGGACCATCTAAGGCACCGGCGGTTGAATTAGGGGAAGTATCTTCGAATGGAAGATTGCAGGCAGGAAGCTTATCCTTTAAAGATGAAGATGAAGATGAAGACGTAGAGGAGATGCCTTTGGTTAGGAACAGGTCTAGAAATGTGTCACTCGGCTCGACTGGACCGGGCAAAGATGTTGAGGTTATCGAGTCTAGCACGCTGCCAAGCACAACACCCCAGGAAAGCAGCAATCCTCCTCCGCAAAATGATACTTCCTTTCACTCTGATGAATGGGGTGGCATTTCTTCAGTGGAACATGATGAAGCAGTAATGCTTGAGGCTGCAATGTTTGGTGGAATCCCGGAAGGAAGTGGTTATCGCCATGCTTATGCACCGCACGAGTTCATGCAGAGTAGGGGTTTCAATCCTCAGCCTGCACCTGTTTCTTATCGCCCACCTTCACCATCATTGGAGACTCAACGCTTGATAAGGGAACAACAGGATGATGAATACCTTGCATCATTACAAGCAGACAGAGAAAAAGAGTTGAAAGCCATAGAGGAAGCTGAGGCTGCTCGCGAAGAGGAAAGACGGAAGGCAGAAGAATCTCAAAGGAAGTTGCTGGAAGAGCAGGAATTGGAAACACAGCTAGCTGCCAAAGAAGTCTCTCTACCACCAGAGCCAGCCTCAGGTGATGATAATGCTGTAAACCTGCTGGTAAAAATGCCAGATGGTAGTCGTCGGGGACGCCGATTCCTAAGATCCGATAAGCTCCAGTCTCTTTTCGACTACATTGATATTGGTAGACAGGTGAAACCAAACAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCCTTTGGTGTTGGAGAAAGTGCCGTGACACTGGAAGAGGTTGGCCTAACCAACAAGCAAGAAGCTTTGTTTTTGGAGTTAGTCTGA 1746 0.4651 MATPNQDTIDTFISITGVSEPVALQKLQEHGGSLNDAVNAFFSEGDRTSSATFPQGDFMDIDDDPRDDEILRPPSLLSSARNLHPFSLLDPTLGRAILDSHLGSTNQTPFVTHPREVREIPIEVKDGSQSTPQAGHTPIIEDVTGTVHAQGSDIHGGVVIIDDDDDDTLPPPTHTVPDSSVIPSAPNFENLPDSSNDIEEEMIRAAIEASKREAEENYSNHELGRQVDLSESGPNPRQTFLEDPELAHAVSLSLKTAEQEKARRVQEGDVGAPTAGPSKAPAVELGEVSSNGRLQAGSLSFKDEDEDEDVEEMPLVRNRSRNVSLGSTGPGKDVEVIESSTLPSTTPQESSNPPPQNDTSFHSDEWGGISSVEHDEAVMLEAAMFGGIPEGSGYRHAYAPHEFMQSRGFNPQPAPVSYRPPSPSLETQRLIREQQDDEYLASLQADREKELKAIEEAEAAREEERRKAEESQRKLLEEQELETQLAAKEVSLPPEPASGDDNAVNLLVKMPDGSRRGRRFLRSDKLQSLFDYIDIGRQVKPNSYRLVRPYPRRAFGVGESAVTLEEVGLTNKQEALFLELV 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02317 581 PANTHER FAS-ASSOCIATED PROTEIN 11 579 - -
Vivi1g02317 581 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 199 217 IPR003903 -
Vivi1g02317 581 Gene3D - 500 580 - -
Vivi1g02317 581 MobiDBLite consensus disorder prediction 174 193 - -
Vivi1g02317 581 MobiDBLite consensus disorder prediction 338 366 - -
Vivi1g02317 581 SMART uim 198 217 IPR003903 -
Vivi1g02317 581 SMART uim 241 260 IPR003903 -
Vivi1g02317 581 MobiDBLite consensus disorder prediction 257 374 - -
Vivi1g02317 581 ProSiteProfiles UBX domain profile. 499 577 IPR001012 GO:0005515
Vivi1g02317 581 CDD UBX 505 579 - -
Vivi1g02317 581 MobiDBLite consensus disorder prediction 46 67 - -
Vivi1g02317 581 SMART ubx_3 496 580 IPR001012 GO:0005515
Vivi1g02317 581 Coils Coil 440 481 - -
Vivi1g02317 581 MobiDBLite consensus disorder prediction 174 194 - -
Vivi1g02317 581 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Vivi1g02317 581 CDD UBA_Ubx1_like 6 42 - -
Vivi1g02317 581 Pfam UBA-like domain 6 46 - -
Vivi1g02317 581 Gene3D - 183 268 - -
Vivi1g02317 581 MobiDBLite consensus disorder prediction 405 424 - -
Vivi1g02317 581 Pfam UBX domain 500 579 IPR001012 GO:0005515
Vivi1g02317 581 Gene3D - 1 45 - -
Vivi1g02317 581 MobiDBLite consensus disorder prediction 213 245 - -
Vivi1g02317 581 MobiDBLite consensus disorder prediction 223 237 - -
Vivi1g02317 581 SUPERFAMILY Ubiquitin-like 462 577 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02317 Vivi-Chr1 48960328 48964511 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02317 - - gmx:100777000 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02317 1 48960328 48964511 Vivi1g02317 1 48960328 48964511 ECH