Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01759 ATGATGAGCTCCACCGTAGTTCCTCAAGATGATTTCATGGATATAGATGATCAGCATAATGTTGAAATTCACAGACCTCCATCATCTTTAGCAAGAAATCCCAATCCATTCTCTCTTCTTGATCCTATGATTGGGAGAAGCATATTTGATACTCATCTTGATTCGACAAACCAGACGCCATTTGTTACACATCCAAGAGAGGTAAGGGAGATTCCCATAGAGGTTAAGGACAGTAATCAATCCACTCCTCAAGCTGGCCATGCTCCAACCATTGAAGATGTCACTGGAACTGTTCATGCCCATGGTCCAGGTATCCATGGGCATGTCATAATCAATGATGAAGATGACAACGATACTCCACCTGCACAGACTGATTCTTCACTTGACAGTAGTGCTAGACCTAGTGCTCCTGAGTTTGGCAATTTACCAGATAATAGCAACGACATAGAAGAAGAAATGATTCGTGCAGCCATTGAGGCATCTAAGCGGGAGGCTGAGGAAAATTACAGAAATCACCAACTTGGAACTATGCAGGACTTAGGTGAATCGGGGCCTCAGCAAAGGCCATCTTACTTGGAGGATCCTGAGCTTGCCCATGCAGTTTCATTGTCTATGAAGACAGTTGAGCAAGAAAAAGCATGGCGTGTACAAGGAGATTTTAAAGCACCAACAGCAGGGCCATCAAAGGCATCAGAGGTTGAATTAGGGGAAATGGCATCAAATGGAAGTAATTGTGGTTATTGTAGATTGCAGGCAGGAAGCTTATCCTTCAAAGATGAAGATGAAGATGTAGAGGAGCAGCCCCTGGTTAGGAACAGGTCTAGAAATATATCGCCGGGCTCCACAGGATCAGGCAGAGATGTTGAATTTATTGAAACTAGCATACTGTCAAGCACGACGCAGCAGAATAGCAGTAATCCTCCTCAGCATAATGAAATTCCCTTCCACTCTGATGAATGGGGTGGCATTTCTTCAGAGGAGCATGACGAAGCAGTAATGCTTGAGGCTGCAATGTTTGGCGGAATCCCAGAAGGGAGTGGGTATCGCCATGCTTATGCACCACATGATTTCATGCAGAATAGGAGTTTCAATCGTCAGCCCACACATCTCCCTTATCGTCCACCTTCACCATCATTGGCTGCTCAGCGCTTGATAAGGGAACAACAGGATGATGAATATCTTGCATCATTACAAGCAGACAGAGAAAAAGAATTGAAGGCCATGGAGGAAGCAGAGGCTGCTCGTGAATTGGAAAGGCAGAGAGCAGAAGAATCTCGAAGGAAGTTGCAGGAAGAGCAGGAATTGGAAACACGGTTATTGGCTAAAGAAGCCTCCCTACCACCAGAACCATCCTCAGAGGATGTTAATGCTGTGACCTTGCTAGTAAAAATGCCAGATGGTAGCCGTCGTGGACGCCGATTCCTAAGATCTGATAAACTACAATCTCTTTTCGACTTCATAGATATTGGTAGGGCTGTGAAACCAGGCAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCCTTTAGTGATGGAGAAAGTGCTGCCACACTCGATGAACTTGGCCTAACCAACAAGCAGGAAGCTTTGTTTTTGGAGTTAATCTGA 1608 0.4515 MMSSTVVPQDDFMDIDDQHNVEIHRPPSSLARNPNPFSLLDPMIGRSIFDTHLDSTNQTPFVTHPREVREIPIEVKDSNQSTPQAGHAPTIEDVTGTVHAHGPGIHGHVIINDEDDNDTPPAQTDSSLDSSARPSAPEFGNLPDNSNDIEEEMIRAAIEASKREAEENYRNHQLGTMQDLGESGPQQRPSYLEDPELAHAVSLSMKTVEQEKAWRVQGDFKAPTAGPSKASEVELGEMASNGSNCGYCRLQAGSLSFKDEDEDVEEQPLVRNRSRNISPGSTGSGRDVEFIETSILSSTTQQNSSNPPQHNEIPFHSDEWGGISSEEHDEAVMLEAAMFGGIPEGSGYRHAYAPHDFMQNRSFNRQPTHLPYRPPSPSLAAQRLIREQQDDEYLASLQADREKELKAMEEAEAARELERQRAEESRRKLQEEQELETRLLAKEASLPPEPSSEDVNAVTLLVKMPDGSRRGRRFLRSDKLQSLFDFIDIGRAVKPGSYRLVRPYPRRAFSDGESAATLDELGLTNKQEALFLELI. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01759 535 PANTHER FAS-ASSOCIATED PROTEIN 54 534 - -
Seca12g01759 535 SMART ubx_3 450 534 IPR001012 GO:0005515
Seca12g01759 535 MobiDBLite consensus disorder prediction 407 433 - -
Seca12g01759 535 Coils Coil 394 442 - -
Seca12g01759 535 Gene3D - 455 534 - -
Seca12g01759 535 SMART uim 192 211 IPR003903 -
Seca12g01759 535 SMART uim 149 168 IPR003903 -
Seca12g01759 535 SUPERFAMILY Ubiquitin-like 416 531 IPR029071 -
Seca12g01759 535 CDD UBX 459 533 - -
Seca12g01759 535 ProSiteProfiles UBX domain profile. 453 531 IPR001012 GO:0005515
Seca12g01759 535 MobiDBLite consensus disorder prediction 94 148 - -
Seca12g01759 535 Pfam UBX domain 452 533 IPR001012 GO:0005515
Seca12g01759 535 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 150 168 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01759 Seca-Chr12 19588318 19593540 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01759 - - aprc:113849050 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01759 12 19588318 19593540 Seca12g01759 12 19588318 19593540 ECH