Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04367 ATGGAAGGTCCTGATATTGAAAAGTCTGAAACAACCAATAAACAGATTAACAGCAACACAAATTGTAATTCCAAACAGCAGAGTGCAGAAAATGCTAACGAACGTCCTGAATGGTTACCTGATGGTTGGAACATGGAAGTCAGAATCCGTAAAAGTGGTGTACACATGGGATCTGGATACAAGTGTTACATCGAACCATTAAAAGGATACAAATTCTTCTCCAAACCAGAGGTATTACGATATCTCGAAACTGTAAAGGACAGCAGTTGCACTTCCAAGAAGGGGAATAAAAGTAGTAAGATAAATACTCCAAATGACAAGAGCTGCACTTCCAAGGAGAAGAAATGCAGTAAAATGCAGACTCCAAACAACAAGAGCTGCAGTTCCAAGAAGGAGAAAAAATGTGCTAGCATGGAATTTCCAAATGACGACAGTTGCACTCCCAAGGAGGAGAAGAAGGGCAATAACATGGATTTTCCAAACAACAACAGTTATGCTCCCAAGAAGGAGAAGAATGGGAATAACTTGGATTCTCCCAACGACAACAGTTGCCTGTCCAAGAAGGAGAAGATAGGCACTAACATGGATTCTCCAAAGGACAGCAGTTGCACTCCGAAGAAGGAGAAGAATTGCACTAACATGGATTCTCCAATTGATGTTGTGGTTGAGAAGTCTATTCCGGAGGATTTACCACATGGGTGGTTAAAAGAATTGAAGATTTCGAAGAATGGCAAGGGCATTAGGAAAGATCCGTTTTATATTGATCCAGTGAGTGGATATGTATTCCGCTCTAAGAAGGATGTACTGCGGTATCTTGCATCTGGGGATATACGGAAATGTGCCTTTAAGCCAAGTAGAAGACAAATCCAAGATGAAGACAACATAACTTCACCACCTGCTGCCAAGCGGCAGAAACTGAAGCAGTCTGCACCCACACAACAGCTTTCTGCAGCCACAGAAATACATGATAAAAGCAGCTTAGAACCTAGTGCTAATAGCCCAAGGAAAAAGCAAAATGCAAATGTTTCAGCTAGAACGAAGGTTGCTTCTGTTCCTAAAGGTGATTCTGTTGCAAATATGCATTCACTAGAAGACGGAGCTGCAAACTCATCTGAAGTGAGGAAATCATCTGACCCAGGTAGGTCAGCACTTTTGAGAAATGAATCCTTGAAGGAATCAGCAAAAGCACTTTTTGCAGATGATTTGCAAGAAGAGGAGCAAGCTGTGAATGCAGTGGAGAATGGTAATGAGAAAAATCACGGTAACCAAAGCATATCCAAAATCAGGAAGGAATTCAGTGTACCTCAGCGGTCATCACCGAGACTTGCTGGAAGTAAATCTGTACAGTTGGTAAACAATGTGGTCAATGAACAGACACTTCAGATTCCAAAAAGAAACTTGAGGAAAAGTAGAAACACTCTAGATGTTGATATTTCTGTGGACCAAGCAGCTCCTAAAGAACAACCATATGTGCAAGAAACAGATAAAATAGAAGACAAAAAGCCAGAAATTCAAATCAGCTCAAACAAATCAGGTAAAAAGAAAGAGCACCACCTTCCTCGTCGTGCTTCAAAACGGTTAGCTGCTATTGAGCATGAGTCAATGAACTCTAAAGTGGAATTGCAGCAAAGTGAGTGTGGGCCAGCTACAGTGCTTGCTAATCAAGCCCCAATAAATGGAAACTCAGCAAATAAAAGGAAAAAGTCAGCAGCACCTCATCTGGAGAAAAGGGGAAAAGAAGAGATGGTTGATGAGAAAACAGAACCTCAGCTGTCCTTTGCATATCACTATTCGTGGTCCGACCCAAGCTTGGAATATGCAATCAATGCCCTCACTGGTGTGTTACCACCAGCTGATAATATACCCAGTACTGTTCCCGAAACTGATAATCAAAAAGCTTTGTTTGATAATGTTACCGGAAGAAGTGCCACTACAATCCCTGGAACTGATGTTCAAAACACTTCAGTTGGTACGGGAAGGAGCACCACTGCAGCCCCTGAAACTGATATTCAAAAAGCTTCAATTGACAATGGTACGGGAAGGAGCGCCACTGAAGTTCTTGAAACTGATATTCGAAAAGCTTCAGTTGACAGTGGTACTGGAAGGAGCACCACTGCAGTCCCTGAAACCGATATTCGAAAAGCTTCAGTTGACAGTGGTACGGGAAGGAGCACCACTGCAGTCCCGGATTCTGATACACAAAAAGCTCCAATTGACAATGGTACGGGAAGTAGCACCACTGCAGTCCCTGATACTGATATTCAAAAAGCTCCAGTTGACAATGGTACGGGGAGTAGCACCACTGCAGTCCCTGATACTGATATTCAAAAAGCTTCGGTGGACAATGGCAGGGCAAGTAGTACCACTGCAGTCCTTGATACTGATATTCAAAAAGCTTCAGTTGACAATGATACGGGAAGGAGCCCCGCTGCAGTCCCTGAAATTGATATTCAAAACACTTCAGTAAACATTGGCAGAAGTGCCACTACAATTCTTGAAACTGATCTTCAAAAAACTTTGATTGACAGTGTTAAGGGGAGTAGCGCCACTGCAATCCCTGAAAACAATGTTCAGAAAACGGTGGTTGAAATGGAATCGGGAAGAAGCACCTCTACAGGACCTGAAACTGATATTCAAAAGTCTTTGATTGACAGTGTTACAGGAAGCAGGGATAGTGAAAACAATTTACATGACACTGTTACAGGAAGCAAGTATAGAAAATCCCAGGTACGTTCTAATAAACCCAAGAGAACGAAAGAGCTCAAAGTACCTGTGCGGTTATCAAAGCGACTTGCTGGCCTGGAACCTGAGTTACCGCCTGCTGAAAGAGCTCTTGAATATTCCACTAGAAAATCATGTAAAGAAGAGACAACAGCCACTGCTACTCTAACTAATGGAGTGTCTGATCATCACAACGCTGGTGAAGAAACCAAGCCTACTCTTCTTCAAGCTTCTGACAGTTTAAAAACAGAAGTACTCGGAGAATCATTAAAACGGAGTGAGAACTCATATGATGCCCAAACCGATCACAAGGAACAATTGGAGAAAGTTGAAGTTGAAAATGTTGGTGATGTGAGAACAGAGCCTAAGCTCCCCTTACCGTTTGGGGACTCTTGGTCAGATCCATGCCTAGAATTTGCCATCAAGACTCTCACTGGTGCTTTTCCAGTTGATGCTGGTGGAGACATAATGCCTGCTTTGCCTCCTGGCTTTGATAATCCCCCATATAGGCAAGTGCATCGAACTGTGGTGACAGACATTAATCAAGAAGCTCATGATAACTCGAACCAACCCTCACTCTATAAGGAGCTTAATATGGTTAGTCAACCTGAGTTGAGGACCGGCTCCATCTCTTATGAAAATGCTTCTAACTTTACAACTAGGGAATCTTATCTTGATCAAGATAACATTCTTAAGAATTTTGATGCGGAACCCAGTCTCACTGGAAACATAACACAACCTGTGCATCATTCTTGGAATATAAACACACTAGCACATGAAGAGCCATTAAAGCAAAATGGACAGGCTGTTGAGGGTGGAATTGTTACAACGGAGCAGCAACTAATTGAAACTGGAGCCGTAAACCATGACAATTCCGAGTTACAGTATTGTGCACCGTTTATGAATTCTTGGTCAGACCCATGCTTAGAATTTGCATTTAAGACTCTTACAGGGGCGATACCAGTAGAGGAAAATTTAACACTCCAAGGATGTTTCCCGGAAACTGCTAACTATCATGAACGGAGGGATGGTGTCTCGTTGTTGCCAGATTTCAGATCATCTAGCTTTTCACAAAGCGATTTCTCCTTTTTCCATGATACAGGGGTTAAGTCCATGCCAGGGCAGCAATCATCAGTAAGCTCTCCATTCCTACCCTTGGAGAAAACAGGTCTTCAAGGTTTTGCTGGAGTTGATCCTCAAACACACTTTTCTCAGTGCAACAATAATTTTCAAAGGTAA 3960 0.4245 MEGPDIEKSETTNKQINSNTNCNSKQQSAENANERPEWLPDGWNMEVRIRKSGVHMGSGYKCYIEPLKGYKFFSKPEVLRYLETVKDSSCTSKKGNKSSKINTPNDKSCTSKEKKCSKMQTPNNKSCSSKKEKKCASMEFPNDDSCTPKEEKKGNNMDFPNNNSYAPKKEKNGNNLDSPNDNSCLSKKEKIGTNMDSPKDSSCTPKKEKNCTNMDSPIDVVVEKSIPEDLPHGWLKELKISKNGKGIRKDPFYIDPVSGYVFRSKKDVLRYLASGDIRKCAFKPSRRQIQDEDNITSPPAAKRQKLKQSAPTQQLSAATEIHDKSSLEPSANSPRKKQNANVSARTKVASVPKGDSVANMHSLEDGAANSSEVRKSSDPGRSALLRNESLKESAKALFADDLQEEEQAVNAVENGNEKNHGNQSISKIRKEFSVPQRSSPRLAGSKSVQLVNNVVNEQTLQIPKRNLRKSRNTLDVDISVDQAAPKEQPYVQETDKIEDKKPEIQISSNKSGKKKEHHLPRRASKRLAAIEHESMNSKVELQQSECGPATVLANQAPINGNSANKRKKSAAPHLEKRGKEEMVDEKTEPQLSFAYHYSWSDPSLEYAINALTGVLPPADNIPSTVPETDNQKALFDNVTGRSATTIPGTDVQNTSVGTGRSTTAAPETDIQKASIDNGTGRSATEVLETDIRKASVDSGTGRSTTAVPETDIRKASVDSGTGRSTTAVPDSDTQKAPIDNGTGSSTTAVPDTDIQKAPVDNGTGSSTTAVPDTDIQKASVDNGRASSTTAVLDTDIQKASVDNDTGRSPAAVPEIDIQNTSVNIGRSATTILETDLQKTLIDSVKGSSATAIPENNVQKTVVEMESGRSTSTGPETDIQKSLIDSVTGSRDSENNLHDTVTGSKYRKSQVRSNKPKRTKELKVPVRLSKRLAGLEPELPPAERALEYSTRKSCKEETTATATLTNGVSDHHNAGEETKPTLLQASDSLKTEVLGESLKRSENSYDAQTDHKEQLEKVEVENVGDVRTEPKLPLPFGDSWSDPCLEFAIKTLTGAFPVDAGGDIMPALPPGFDNPPYRQVHRTVVTDINQEAHDNSNQPSLYKELNMVSQPELRTGSISYENASNFTTRESYLDQDNILKNFDAEPSLTGNITQPVHHSWNINTLAHEEPLKQNGQAVEGGIVTTEQQLIETGAVNHDNSELQYCAPFMNSWSDPCLEFAFKTLTGAIPVEENLTLQGCFPETANYHERRDGVSLLPDFRSSSFSQSDFSFFHDTGVKSMPGQQSSVSSPFLPLEKTGLQGFAGVDPQTHFSQCNNNFQR 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04367 1319 PANTHER OS04G0193200 PROTEIN 11 622 IPR038945 -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 640 684 - -
Vimu11g04367 1319 Pfam Methyl-CpG binding domain 230 275 IPR001739 GO:0003677
Vimu11g04367 1319 Pfam Methyl-CpG binding domain 31 87 IPR001739 GO:0003677
Vimu11g04367 1319 Gene3D - 193 353 - -
Vimu11g04367 1319 Gene3D - 5 137 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 89 210 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 484 521 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 411 445 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 285 359 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 555 585 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 89 106 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 884 908 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 157 200 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 954 970 - -
Vimu11g04367 1319 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 29 104 IPR001739 GO:0003677
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 127 156 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 884 921 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 947 982 - -
Vimu11g04367 1319 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 220 287 IPR001739 GO:0003677
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 491 513 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 291 346 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 10 33 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 640 771 - -
Vimu11g04367 1319 Coils Coil 997 1017 - -
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 696 710 - -
Vimu11g04367 1319 SUPERFAMILY DNA-binding domain 21 91 IPR016177 GO:0003677
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 717 771 - -
Vimu11g04367 1319 SUPERFAMILY DNA-binding domain 226 277 IPR016177 GO:0003677
Vimu11g04367 1319 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04367 Vimu-Chr11 64973429 64979466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04367 - - vra:106768326 2453.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04367 11 64973429 64979466 Vimu11g04367 11 64973429 64979466 ECH
Vimu7g02469 7 21107493 21116712 Vimu11g04367 11 64973429 64979466 PCT