Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0642 ATGGGAAGAAATGACCTCGAAAAGTTTGAAGCAACCAATAGATTGTTCAGAAAGAACAGAAGTAGCGATTCTTCACAAAAAGGAAATGAACATCCTGCATGGTTACCTGATGGCTGGAACGTTGGTTTCAAAACACGAAAAAGTGGTGTACACAAGGGAGCTAGATATAAGTGCTTCATTGATCCATTGAATAGATTCAAATTCTACTCCAAACCTGAAGTATTACGGTATCTTGAAACTGTAGATGGCAGCAACTGCACTTTCAAGAAGGGATGCGCTGCTAATCAATCTACAGGCAATCTGTCATCTGCCGCCAAAAGACAGAAACTGAAGCATTCTGCAATCAAACAGCAGCTTTTTGATGGTAAAGAAGTTTCTGACGGTGTCTTAGAATTGTCAGGTGCCTGCAGCTCAAAAGGAGGGCAAAATATGAAGGTATCTGCTGAATTTATGGTTTCTCCGGTTTTGACATCTGAATCTGTGGTCAAGATGCATTTGCCCAAGGATTCAGCTGAAAACAGTTCTGAAATTAAACAATCTAATCCAGCTGATGTGCAAGAGAAGAATTGTTTTATGAGTGGAGCGGAGAAGGCTGATGAAGAGAACTCGTTCCACCCAAGCATATCCAAAAAGGAGAAAAAATTGAATGTGCCTCACCAGAATTTGAGACAACTCGCTGGGAAAGCCGACCAGTTAACCAGCACTGTGACCCATGAACCAGCTCGTCGAGTTTCAAAGAGAAACTTAAGGAAAATTGTAACCCCTATAGACATTGACTTGAAAAATAAATCATCTCAGAAGCTGAATGTTGTCCCAGAAACTCAGGGCGTTCAAAAAACACGTGGAGAGTTACTGAACAAAAACAGCAACTCTGAAGTTGAAGTAGTTAACATAGATCAACCGTACCAGCTAGTAGCAGCGAAAATAGATGACAAAGAGGTAGAACTTAAGTATTTTCAGTCTCAGGATTCCAGTGCACAAAGCCTCAAGGTTGAAATGAAGAACATCACGAGCGAATTACCTGCTAGGGATGTTTCTCATAAGGATCAAAGTTTGGGTTCTGAAGCTAATGTCGTGAGAGAAGACAAATTGCCTGTCAATCAGATTGGAAAAAGTGATGCCTCTGAAATTCATGTTAACTCGAACAAGTATAGTAATAAGAAAGATCATTACAATCCACATCGGCGGGCTTCAAAGCGACTTGCTGGATTAGAACCAGAGGTGATGACCAACTCCATAGTCTGCAATAGAGCTCCTGAATATAAGAACAGAAGGTCTAAAGGTAGGTTCAATGCAGTATTGCAGCAAACTGAGGGTGGGCTGGCTGTTGATCTTGCAGATCATGCTTCTACCTATATGAATATGCCATTAAATGGAGAGACATCAAATAAAACCTTTAAATCTCCTAAAATTCCACCCATTACCCATGAGCAACCAGAAAAATATGGAAACGAAGAAATAGATTTTGAGAAATCAGAACCTGAGCAGTCCCTTGCTTCCCAATATTCTCAGTCTGACCCATGCTTGGAATTTGCAATTAAGACTCTCACTGGTGTGTTACCCGTTGAGGATTTGATTGGTAATGGGCCTAATCTGGCTACTGAAGCTATGTTGTTTGACAGTGCTAAAGAAAGCAGCGGTGACAGAAATGTGCAGTTAAAGTCAAAAAAAATGAAGAGCAAGAAAGATCTTAAATTGCCTCGCCGGTTGTCAAGGAGACTTTCTGGCCATGACCCTGAGGTAAAGCCTGCTTTAAGAGCTCTAGAATATGCGACTAGGAAATCGTGCAAAGATAAATCAACTGCAACTGTGGTTTTGAACAATGGAGTTTCTAAGCTAGTTAGTATTGGCAAAGAAACAGAGCTTACTATTGATGCATCTAACAGTTTGTTGAAATCAAGTGTGCTTGGTGAATCATCGAACAAGAGTGAAAAGTCATATGAAGTCCAAAATTTTCCCAAGTATCAACAGCAGAAGCTTGAAACTGATAGAACTGGTGACAAGAGTTTGGAGACACAGGTCTGCTTACTGTTTGGGATGGACACAGAGCATACTCTTCCTGCATCCGACGGTTTGGAAAAAAGAGTACTTGAAGAAACGACGAACAAGAGTGAGAAGCCATATGAAACCCGGACGGTTGAAGAATTGAATGAGAATGTAAAGTTATTTGAAACCCAAACTATTCCCATAGGGCAACAGCAGGAGCTTGAAACTGTGATGAGTTCAGAAACACAGCTTGGCTTACCAATTGGTGAAGAAACTGAGGGTACACTTCATGCATCTGGCAGTTCAGAAACACGAGTGCTCAAAGGCACATCAAACAAGAGTGTGAAATCACGTGAATCTCAAACTATTGAAGAATTGTTGTATGAAGATCAAACTGTTGCCAATGAGCGACAGCAGAAGCTTGAAGCTGAAAAACTTGGTGATGTGATGTCAGAGTCACAAACGTGCTTACACTATGAGCAGTTTTGGTCAGATCCATGCCTAGAATTTGCAATCAAGACCCTAACAGGTACAATGCCAGTGGATGATGCTGCCAGCATTTTGCCAGTTATGACCCCTGATAATCATGACCAAGCAGAAAAGGAATGGCTTGAGGGCGTGTTAAATAATCGCAAAGAAAGTCATGATAACTTGAACCAATCCGAAAATAATAAACTCATGATGCCTAATTTATTTTTCCAGCCTCCGAAACAAACTCAGTTGAGGACCAGCTCCACCTTTCGCCAAAATAGGGTGTCTTGTAGTGATGAAGCTGATTTAACTAGGAATTTGAGTGGAGAGCCCCATACAACAAAATCTGTGCATCAACAAATAACTGGAAGCACAGTTAATCATGAAGAGCTATCGAAGAAAATCCCTCAAGCTTTTGATGTCGATGCTGTTCCATCTGAGCAAACACAACTTGGAACTGAAATCTTGAGCCGTGAGAAGCCTGAGGCTCAGTTTCGTTATCCATTTATGGATTCTTGGTCAGACCCAAGTCTGGAATTTGCATTCAAGACTCTTACAGGTGCCATAACTATAGAGGAAGATTTGCCAATTCAAGGCTGTTTGGAGGGAACTTCCATATGGAATGGCCAGAGGGACAGTTACTCATCGTTACCGGATTTCGGATCGACCAGTTTTTCTCAAAGTGATATATCATCCTACTACAATATGGAGGAGAGGTCCATACCAGAGCAGCAGCCACAAACGAGCCTTGGCTTGGAGGTTGATCCTCAGAAATACCATTCTCATTGCAATAGGAGAATTCCAAGGTAA 3267 0.4138 MGRNDLEKFEATNRLFRKNRSSDSSQKGNEHPAWLPDGWNVGFKTRKSGVHKGARYKCFIDPLNRFKFYSKPEVLRYLETVDGSNCTFKKGCAANQSTGNLSSAAKRQKLKHSAIKQQLFDGKEVSDGVLELSGACSSKGGQNMKVSAEFMVSPVLTSESVVKMHLPKDSAENSSEIKQSNPADVQEKNCFMSGAEKADEENSFHPSISKKEKKLNVPHQNLRQLAGKADQLTSTVTHEPARRVSKRNLRKIVTPIDIDLKNKSSQKLNVVPETQGVQKTRGELLNKNSNSEVEVVNIDQPYQLVAAKIDDKEVELKYFQSQDSSAQSLKVEMKNITSELPARDVSHKDQSLGSEANVVREDKLPVNQIGKSDASEIHVNSNKYSNKKDHYNPHRRASKRLAGLEPEVMTNSIVCNRAPEYKNRRSKGRFNAVLQQTEGGLAVDLADHASTYMNMPLNGETSNKTFKSPKIPPITHEQPEKYGNEEIDFEKSEPEQSLASQYSQSDPCLEFAIKTLTGVLPVEDLIGNGPNLATEAMLFDSAKESSGDRNVQLKSKKMKSKKDLKLPRRLSRRLSGHDPEVKPALRALEYATRKSCKDKSTATVVLNNGVSKLVSIGKETELTIDASNSLLKSSVLGESSNKSEKSYEVQNFPKYQQQKLETDRTGDKSLETQVCLLFGMDTEHTLPASDGLEKRVLEETTNKSEKPYETRTVEELNENVKLFETQTIPIGQQQELETVMSSETQLGLPIGEETEGTLHASGSSETRVLKGTSNKSVKSRESQTIEELLYEDQTVANERQQKLEAEKLGDVMSESQTCLHYEQFWSDPCLEFAIKTLTGTMPVDDAASILPVMTPDNHDQAEKEWLEGVLNNRKESHDNLNQSENNKLMMPNLFFQPPKQTQLRTSSTFRQNRVSCSDEADLTRNLSGEPHTTKSVHQQITGSTVNHEELSKKIPQAFDVDAVPSEQTQLGTEILSREKPEAQFRYPFMDSWSDPSLEFAFKTLTGAITIEEDLPIQGCLEGTSIWNGQRDSYSSLPDFGSTSFSQSDISSYYNMEERSIPEQQPQTSLGLEVDPQKYHSHCNRRIPR 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0642 1088 SUPERFAMILY DNA-binding domain 22 86 IPR016177 GO:0003677
Lele52g0642 1088 MobiDBLite consensus disorder prediction 754 780 - -
Lele52g0642 1088 MobiDBLite consensus disorder prediction 1 33 - -
Lele52g0642 1088 Gene3D - 5 121 - -
Lele52g0642 1088 PANTHER OS04G0193200 PROTEIN 931 1066 IPR038945 -
Lele52g0642 1088 MobiDBLite consensus disorder prediction 757 779 - -
Lele52g0642 1088 Coils Coil 866 886 - -
Lele52g0642 1088 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 25 93 IPR001739 GO:0003677
Lele52g0642 1088 MobiDBLite consensus disorder prediction 544 565 - -
Lele52g0642 1088 MobiDBLite consensus disorder prediction 1 25 - -
Lele52g0642 1088 Pfam Methyl-CpG binding domain 31 81 IPR001739 GO:0003677
Lele52g0642 1088 MobiDBLite consensus disorder prediction 460 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0642 Lele-ChrLele52 4067425 4072480 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0642 52 4067425 4072480 Lele52g0642 52 4067425 4072480 ECH
Lele49g0622 49 3766382 3771377 Lele52g0642 52 4067425 4072480 hybridization
Lele50g0650 50 3983121 3988065 Lele52g0642 52 4067425 4072480 hybridization