Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03560 ATGGAAAGTTCTGATATTGAGAAATCTGAAGAAACCAATAGACAGATTGATAGTAACAAAAATTCTAATTCTAAACAGCAGAGTGTAGAGAAATCTAATGAACATCCTGAATGGTTACCTGATGGCTGGAACATGGAAGTTAGAATCCGTAAAAGTGGTGTACACATGGGATCTGGATACAAGTGTTACATCGAACCGTTGAAAGGATTCAAATTCTTCTCCAAACCAGAGGTATTACGATACCTCAAAACTGTAAAGGACAACAGTTGCACTTCCAAGAAGGGGAAGAAATGTAGTAAGATAAATACTCCAAATGACAAGAGTTGCACTTCCAAGGAGGAGAAGAAATGCAGTAAAATGCAGACTCCAAATGACAAGAGTTGTACTTCCAAAAAGGAGAAGAAATGCACTAGCATGGAGTTTCCAAATGACAACAGCTGCACTCCCAAGGAGGAGACGAAGTGCAGTAACATGGATTTTGCAAACTACAACAGTTGCACTCCCAAGGAGGAGAAGAAGTGCAGTAACATGGATTTCGCAAACTACAACAATTGCACTCCCAAGAAGGAGAAGAATGGGAGTAACATGGATTCTCCCAACAGCAACAGTTGCACATCCAAGAAGGAGAAGAAAGGCACTAATGTGGATTCTCCAAAGGACAACAGTTGCGCTCCCAAGAAGAAGACTTGCAGTAACATGGATTCTCCAATTGATGTTGTGGTTGAGAAGTCTGTTGCGGAGGATTTACCACCTGGGTGGGTGAAAGAATTAAAGATCACGAAGAACAGCAAGGGCATTCGGAAAGATCCGTTTTATATTGATCCAGTGAGTGGATATGTATTCCGCTCTAAAAAGGATGTACTGCGGTATCTTGAATCTGGTGATATACGGTCATGTGCCTTTAAGCCAAGTAGAAGACAAATCCAAGATGAAGACAGCATAACTCCACCACCTGCTGCCAAGAGACAGAAACTGAAGCAGTCTGCACCCACACAACAGCTTTCTGCAGCCACAGAAATGCTTGATAAAAACAGGTTAGAATTGCCAAATACTAATAGCCCAAGGAAAAAGCAAAATACAGATGTTTCATCTAGAACAAAGGCCACTTCTGTTCCCATAGGTGATTCTGATGTAAAGATGCATTCACTAGACGATGGAGCTGCAAACTCTTCTGAAGTGAAGGAAACATCTGACGCAGGTAGCTCAGCACTTTTGAAAAATGAATCCTTGAAGGAATCAGCAAAAGCAGTAGATGATGTGCAAGAGAAGGAGCGTGCTGTGAATACAATGGAGAATGGTAATGAAAAGAATCACAGTAATCATAGCATATCCAAAATCAGGAAGGAGTTCAATGTACGTCAGCGGTCATCACCAAGATTTGCTGCAAGTAAATCTGTCCAGTTGAACAATGTGATTAATGAACAGACTCTTCAGGCTCCAAAAAGAAACTTGAGGAAAAGTAGAAACACTCTAGATGTTGATATTTCTGTGGACCAAGCAGCTCCTAAAGAACAACCACATCAGCAAGAAACAGATAAAATTGAAGACAATAAGCCAGAAATTCAAATCAGCTCGAAGAAATCAGGTAAAAAGAAAGAACACCACCTTCCTCGTCGTGCTTCAAAACGATTAGCTGCTATTGAACATGAGTCAATGAAATCAAAAGCGGAATTGCAGAAAAGTGAATGTGGGCCAGTTACAGTGCTTGCTGATCAAGCCCCAACAAATGGAAAGTCAGCAAACAAAAGGAAAAAGTCAGTACCTCGGCTGGAGAAATGTCGAAAAGAAGAGATGAATGATGAGAAGGCAGAACCTCAGCTGTCCTTTGCATATCACTATTCGTGGTCTGACCCAAGCTTGGAATATGCAATCAACGCCCTCACTGGTGTGTTACCATCAGCTGATAATATACCCAATACTGATGCTGAAACTGATATTCAAAAAACTTTGTTTGACAATGTAGCAGGAAGAAGCGCCACTACAATCCCTGGAACTGATGTTCAAAATACTTTAGTTAGTAATGTTACTGGAAGGAGCACCACTGCAGTTCCTGAAACTGATATGCAAACTTCAGTTGACAATGTTACAGGAAGGAGCACCACTGCAGTCCCCGAAACTGATATTCAAAAACCTTCGGTTGACAATGTTACAGGAAGGAGCGCCACTGCAGTCCCTGAAAATGATATTCAAAAATCTTCCGTTGACAATGTTAGGGGAAGAAGTGCCACTGCAGTCCCTGAAACTGATACTCAAAAATCTTTGGTTGACAATGTTAAGGGAAGTAACGCCACCTCAATCCCTGAAAATGATGTTCAAAAAACTCTGGTTGAAAATGAATCAGGAAGAAGCACCTCTACAGCCCCTGAAACTGATATTGAAAAATCTTTGATTGACAGTGTTACAGGAAGCAGGGACAGTGAAAACAATTTACTTGACACTGTTACAAGAAGCAGGGACAGTGAAAACAATTTACATGACACTGTTACGGGAAGCAGGGACAGAAAATCCCAGGTACGTTCAAATAAACCCAAGAGAAAGAAAGAGCTCAAAGTACCCATGCGATTATCAAAGCGACTTGCTGGGCTTGAACCTGAGTTACCACCTGCTGAAAGAGCTCTTGAATATTCCACTAGAAAAACTGTCGCTGCCACTTTAACTAATGGAGTGTCTGATCATCACGATGCTGGGGAAGAAACCAAGCTTATTCTTCGAGCTTCTGACAGTTTGAAAACAGAAGTACTAGGAGAATCATTAACACGGAGTGATAAGTCACATGATGCCCAAACCGATCACAAGGAACAGGAGAAAGTTAAAGCTGAAAATGTTGGTGATGTGTCAGAACCACAGCTCCCCTTACCGTTTGGGGACTGTTGGTCAGATCCATGCCTAGAATTTGCAATCAAGACTCTCACTGGTGCTTTTCCAGTTGATGCTGGTGCAGACATTATGCCTGCTTTGCCTCCTGGCTTTGATAATCCGCCATATAAGCAAGTGCATCGAAGTGTGATGACAAACATTAATCAAGAAGCTCATGATAACTCGAACCAATCCCTGAACAGTAGGGAGCTTAATGTGGTTAGTCAACCTGAGTTGAGGACCGGCTCCACCTCTTATGAAAATGCTCCTGAGTTTACGACTAGAGAGTCTTATCTTGATCAAGACAACATACTTAAGAATTTGGACGGGGAAGCTGGTGTCGCTGGAAACATAACGCAACCTGTGCATCATTCTAGGAATATAAACACACTAGCACATGAAGAGCCATTAAAGCAAAATGGACAGGTTGTTGAGGGTGGAATTGTTACAACGGAGCACCAACTAATTGAAACTGGAGCTGTAAACCACGATAATTCTGAGTTACACTATTGTGCTCCGTTTCTGAATTCTTGGTCAGATCCATGCCTAGAATTTGCATTTAAGACTCTTACAGGTGTGATACCAGTAGAGGAAAATTTAACACTCCAAGGATGTTTCCCGGAAGCTGCCAACTATCATGAACGAAGGGATGGTGTCTCATTGTTGCCAGATTTCAGATCTTCCAGCTTTTCTCAAAGCGATTTCTCGTTTCTACATGATACAGGGGTTAAGCCCATACCGGGCCAGCAGTCATCAGTGAGTTCTTCATTCCTACCCTTGGAGAAAACAAGCCTTCAAGGTTTCGCTGGAGTTGATCCTCAAACACAATTTTCTCAGTGCAATAATAATTTTCAGAGAAGGTAA 3720 0.418 MESSDIEKSEETNRQIDSNKNSNSKQQSVEKSNEHPEWLPDGWNMEVRIRKSGVHMGSGYKCYIEPLKGFKFFSKPEVLRYLKTVKDNSCTSKKGKKCSKINTPNDKSCTSKEEKKCSKMQTPNDKSCTSKKEKKCTSMEFPNDNSCTPKEETKCSNMDFANYNSCTPKEEKKCSNMDFANYNNCTPKKEKNGSNMDSPNSNSCTSKKEKKGTNVDSPKDNSCAPKKKTCSNMDSPIDVVVEKSVAEDLPPGWVKELKITKNSKGIRKDPFYIDPVSGYVFRSKKDVLRYLESGDIRSCAFKPSRRQIQDEDSITPPPAAKRQKLKQSAPTQQLSAATEMLDKNRLELPNTNSPRKKQNTDVSSRTKATSVPIGDSDVKMHSLDDGAANSSEVKETSDAGSSALLKNESLKESAKAVDDVQEKERAVNTMENGNEKNHSNHSISKIRKEFNVRQRSSPRFAASKSVQLNNVINEQTLQAPKRNLRKSRNTLDVDISVDQAAPKEQPHQQETDKIEDNKPEIQISSKKSGKKKEHHLPRRASKRLAAIEHESMKSKAELQKSECGPVTVLADQAPTNGKSANKRKKSVPRLEKCRKEEMNDEKAEPQLSFAYHYSWSDPSLEYAINALTGVLPSADNIPNTDAETDIQKTLFDNVAGRSATTIPGTDVQNTLVSNVTGRSTTAVPETDMQTSVDNVTGRSTTAVPETDIQKPSVDNVTGRSATAVPENDIQKSSVDNVRGRSATAVPETDTQKSLVDNVKGSNATSIPENDVQKTLVENESGRSTSTAPETDIEKSLIDSVTGSRDSENNLLDTVTRSRDSENNLHDTVTGSRDRKSQVRSNKPKRKKELKVPMRLSKRLAGLEPELPPAERALEYSTRKTVAATLTNGVSDHHDAGEETKLILRASDSLKTEVLGESLTRSDKSHDAQTDHKEQEKVKAENVGDVSEPQLPLPFGDCWSDPCLEFAIKTLTGAFPVDAGADIMPALPPGFDNPPYKQVHRSVMTNINQEAHDNSNQSLNSRELNVVSQPELRTGSTSYENAPEFTTRESYLDQDNILKNLDGEAGVAGNITQPVHHSRNINTLAHEEPLKQNGQVVEGGIVTTEHQLIETGAVNHDNSELHYCAPFLNSWSDPCLEFAFKTLTGVIPVEENLTLQGCFPEAANYHERRDGVSLLPDFRSSSFSQSDFSFLHDTGVKPIPGQQSSVSSSFLPLEKTSLQGFAGVDPQTQFSQCNNNFQRR* 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 505 527 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 188 208 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 1 15 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 346 421 - -
Lapu3g03560 1239 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 239 306 IPR001739 GO:0003677
Lapu3g03560 1239 PANTHER OS04G0193200 PROTEIN 11 648 IPR038945 -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 733 850 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 916 944 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 346 371 - -
Lapu3g03560 1239 SUPERFAMILY DNA-binding domain 25 90 IPR016177 GO:0003677
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 496 545 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 733 810 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 690 721 - -
Lapu3g03560 1239 SUPERFAMILY DNA-binding domain 246 299 IPR016177 GO:0003677
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 304 332 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 811 837 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 389 408 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 916 942 - -
Lapu3g03560 1239 Gene3D - 215 343 - -
Lapu3g03560 1239 Gene3D - 4 137 - -
Lapu3g03560 1239 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 29 108 IPR001739 GO:0003677
Lapu3g03560 1239 Pfam Methyl-CpG binding domain 248 295 IPR001739 GO:0003677
Lapu3g03560 1239 Pfam Methyl-CpG binding domain 31 93 IPR001739 GO:0003677
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 1 40 - -
Lapu3g03560 1239 MobiDBLite consensus disorder prediction 188 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03560 Lapu-Chr3 59032559 59039866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03560 - - pvu:PHAVU_002G287000g 1821.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03560 3 59032559 59039866 Lapu3g03560 3 59032559 59039866 ECH