Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06447 ATGGGAAAACCTGATGTTGAAAAGTCTGAAGAAACCAAAAAAAGCAATTCTAAACAACAAAATGTTGAGAAAGCTAATGAACATCCTGAATGGTTACCTGATGGCTGGAGTGTGGAAGTCAGAACCCGAAAAAGCGGTACACATATGGGATCTGGATATAAGTGTTACATTGATCCGTTGAGTGGATACAAATTCTACTCCAAACCAGAGGTATTACGATATCTTGAAACTAAAAAGGACAACAAAACTATAAAGGACAACAAAACCATAAAGGACAACAGCTGCACTTCCAAGAAGGAGAAGAAATGCACTAACACGGATTCTCCAAGCAATGTTTGTATCAAAACCATAAAGGACAACAACCGCACTTCCAAGAAGGAGAAGAAATGCACTGACACGGATTCTCCAAGCAATGTTTGTATCAAAACCATAAAGGACAACAGTTGTACTTCCAAGAAGGAGAAGAAATGCACTAACACGGATTCTCCAAGCAATGTTGTGGTTGAGAAGTCCACTGTGGAGGATTTACCACCTGGATGGATTAAAGAAGTAAAGATTAGGAAGAACAGCAATGGCGTTAGGAAAGATCCGTTTTATACAGATCCAGTAAGTGGATATGTATTCCGGTCAAAAAAGGATGTACTGCGCTATCTCGAATCTGGAGACATAGGTAAATGTGCATTTAAACCAAGTAAAGGACAAATCCAAGATGGAGGCAACTTAACTCCATCACCTGTTGCCAAGAGACAGAAGCTGAAGCAGTCTGCACCCAAGCAACAGCTATTTGTTGCCAAAGAACTAGTTGATAAAGGCAACTTAGAATTGCCAGATGTTAACAACTCAAGTAAAGGGCAAGATGTGAATGTGCTATCTGGAATGATGGTTGCTCCTGTCCCCACAAGCAAAACTGTTGCAAAGATGCATTCGCTAGTGGATGGAGCTGCAACTCCTGAAATGAAGAAAACATCTGACCCAGGCAGCTCAGCACTTTTAAAATATGAATCCTTGAAAGAATCAGAAAAAATGCTTTATGCAGATGGTGTGCAAGAGAAGGAGCATGTTGTGAATATGATGGAGAATGCTAATGAAAAGAATCACAGTAACCATAGCATATCCAAAAACAAAAAAGAGTTCAATGTGCGCCATCGATCTTCACCAAGACTTGCTGGGATTGAACCTGTCCAGTTGGCCAATGATGCGGTCAATGATCAGACTCTTCTAGTTCCAAAAAGAAACTTGAGGAAAAGTAGAACCACTCTAGATGCCGACATGGAAAAAAAATCATCTCAGAATTTCAATGGTGTCCCAGAAATTGAGCCAGTGCATAAAATGCAACAAAAGGCAATGAACACAAGCAACAATCTTTCTGAAGACCAAGTAGTTTTCAATGAACAACAACATCAGCGAGAAAGAGATAAAATAGAAGACAGTAAGCCAGAAACTCATACTAACTCAAACAAATCCAGTAAGAAGAAAGAGCACTGCATTTCTCGTCGGGCTTCAAAACGCCTAGTTGAATTGCAGCAAAGTGAGGGCGGCCCAGTTACAGAACTTGCAGATCATGCACCAAATAATGGAGAGTCAGGAAATAAAAGAAGAAAATCTCCTAAAATCGCACCTACTGCAGCCAACCAACTGAAGAAACATGAAGATGAAGAAATGGATGATGAGAAATCAGAACCTCAGCTGTCCTTTGCATTCCACTACTCTTGGTCTGACCCATGCCTGGAATTTGCAATCAATACCCTCACGGGTGTGTTACCACCAGCTGAGGATTCAGTTGATAATGGACCGATTACAGTCCCTAAAACTGATATGCAAAAAACTTCGTTTGACAATGTTACAGGAACAAGCAGCAGCAGACAAAACAATTCAGTTGGTAATGGGCCCACTACAGTCCCTGAAACTGATATTCTAAAAACTTTGTCTGACAATGTTACAGGAAGAAGCAGGGACAGTCAAAACAATTCAGTTCATGAACCCACTACAGTCCCTGAAACTGATGTTCAAAAAACTTTCTCTGACAATGTTACAGGAAGAAGCAGGGACAGTCAAAACAATTCATTTGACAATATTACAGGAAGCAGGGACAGAAATACACAGGTACTTTCAAATAAATCCAAGAGAAAGAAAGATCTCAAAGTACCTATGCGGTTGTCAAAACGACTTGCTGGCCTTAAACCTGAGGTACTGCCTTCTGAAAGAGCTCTTGAATATTCCACTAGAAAATCATGTAAAGAAGAACCAACTGCTACTGCAATTTTAACTAATGGGGCATCTGACCATCCTGATGCTGGGGCAGAAACCAAGCTTACTCTTCATGCATCTGACAGTTTGAAAACAGAAGTACTGGGAGAATCATCAAACAAGAGTGAGAAGTCATATGATGCTCAAACTGTTTCCAAGGAACAATTGCTGAAAATTGAAGCTGAAAATATCGGTGATGAGAGGTCAGAGCCACAGCTCCCCTTACCATTTGAGGACTCTTGGTCAGACCCATGCCTAGAATTTGCAATCAAGACTCTCACTGGTGCTTTGCCAGTTGATTCTGCTGTGGACATTTTGCCAGTTATGACTCCTGATGTTGATAACCTGTCAAATAAGGAATTGCATGGGAGAGTGGCGACAGGCATCAATGAAGAAGCTCAAGACAACTCAATCCAATCCCAGGACAAGAAAGAGCTTTATATGGATGGCCAGCCTTCAAAACTACTCCTGGGGCAACCTGAGTTGACGACCAGCTCCACATCTTGTGAAAATGCCCCTAAATTTACAACTGGAGAATCTCATAGTGTTGAAGGCAATATATTAAGGAATTTGGACAGGGAATCTCTACATATTGAAGCTGGAGATGCAGCGCAATTTGGGCATCATTCTAGAAGAAATATAAACACACAAATGCATGAAGAGCCATTAAAGAAAAAGGGACATGTTGAGGGTGAATTTGGTACAATGGAGCATCCACCTCTTCCAACTGAAACATTAAACCATGATAATACTGAATTGCAGTTTTGTCCTTCGTTTATGAATTCTTGGTCAGACCCATGCCTAGAATTTGCATTTAAGACTCTTACAGGTGTGATTCCAGTAGAGGAAAATTTAGCAATTCAAGGATGTTTCCAGGAGCCTGCTAACTGTCACGAACCAAGGGATGGTGGGTCAACATTGCCAGATTTTGGATCTTCCAGCTTTTCTCAAAGTGATGTCTCATTTCACTATGATATAGGAGTGAAGCCCATGCCAGGGCAGCAGTCATCAATGAGCTCTTCATTCCTATCCATGGAAAAAGCGACCCTACAAGGCTGCCCCGGAGTTGATCCTCAAAAACACTATTCTCAGTACAATAAGAATTTTCAAAGAAGGTAA 3366 0.41 MGKPDVEKSEETKKSNSKQQNVEKANEHPEWLPDGWSVEVRTRKSGTHMGSGYKCYIDPLSGYKFYSKPEVLRYLETKKDNKTIKDNKTIKDNSCTSKKEKKCTNTDSPSNVCIKTIKDNNRTSKKEKKCTDTDSPSNVCIKTIKDNSCTSKKEKKCTNTDSPSNVVVEKSTVEDLPPGWIKEVKIRKNSNGVRKDPFYTDPVSGYVFRSKKDVLRYLESGDIGKCAFKPSKGQIQDGGNLTPSPVAKRQKLKQSAPKQQLFVAKELVDKGNLELPDVNNSSKGQDVNVLSGMMVAPVPTSKTVAKMHSLVDGAATPEMKKTSDPGSSALLKYESLKESEKMLYADGVQEKEHVVNMMENANEKNHSNHSISKNKKEFNVRHRSSPRLAGIEPVQLANDAVNDQTLLVPKRNLRKSRTTLDADMEKKSSQNFNGVPEIEPVHKMQQKAMNTSNNLSEDQVVFNEQQHQRERDKIEDSKPETHTNSNKSSKKKEHCISRRASKRLVELQQSEGGPVTELADHAPNNGESGNKRRKSPKIAPTAANQLKKHEDEEMDDEKSEPQLSFAFHYSWSDPCLEFAINTLTGVLPPAEDSVDNGPITVPKTDMQKTSFDNVTGTSSSRQNNSVGNGPTTVPETDILKTLSDNVTGRSRDSQNNSVHEPTTVPETDVQKTFSDNVTGRSRDSQNNSFDNITGSRDRNTQVLSNKSKRKKDLKVPMRLSKRLAGLKPEVLPSERALEYSTRKSCKEEPTATAILTNGASDHPDAGAETKLTLHASDSLKTEVLGESSNKSEKSYDAQTVSKEQLLKIEAENIGDERSEPQLPLPFEDSWSDPCLEFAIKTLTGALPVDSAVDILPVMTPDVDNLSNKELHGRVATGINEEAQDNSIQSQDKKELYMDGQPSKLLLGQPELTTSSTSCENAPKFTTGESHSVEGNILRNLDRESLHIEAGDAAQFGHHSRRNINTQMHEEPLKKKGHVEGEFGTMEHPPLPTETLNHDNTELQFCPSFMNSWSDPCLEFAFKTLTGVIPVEENLAIQGCFQEPANCHEPRDGGSTLPDFGSSSFSQSDVSFHYDIGVKPMPGQQSSMSSSFLSMEKATLQGCPGVDPQKHYSQYNKNFQRR. 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06447 1121 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 166 235 IPR001739 GO:0003677
Seca12g06447 1121 Pfam Methyl-CpG binding domain 176 221 IPR001739 GO:0003677
Seca12g06447 1121 Pfam Methyl-CpG binding domain 26 85 IPR001739 GO:0003677
Seca12g06447 1121 PANTHER OS04G0193200 PROTEIN 8 624 IPR038945 -
Seca12g06447 1121 MobiDBLite consensus disorder prediction 464 491 - -
Seca12g06447 1121 Gene3D - 141 266 - -
Seca12g06447 1121 Gene3D - 2 136 - -
Seca12g06447 1121 MobiDBLite consensus disorder prediction 591 713 - -
Seca12g06447 1121 MobiDBLite consensus disorder prediction 464 559 - -
Seca12g06447 1121 SUPERFAMILY DNA-binding domain 175 223 IPR016177 GO:0003677
Seca12g06447 1121 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 22 95 IPR001739 GO:0003677
Seca12g06447 1121 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g06447 1121 MobiDBLite consensus disorder prediction 600 701 - -
Seca12g06447 1121 MobiDBLite consensus disorder prediction 544 559 - -
Seca12g06447 1121 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Seca12g06447 1121 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06447 Seca-Chr12 156552983 156559588 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06447 - - lja:Lj4g3v2917630.1 1365.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06447 12 156552983 156559588 Seca12g06447 12 156552983 156559588 ECH
Seca12g06447 12 156552983 156559588 Seca12g06447 12 156552983 156559588 PCT