Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0297 ATGGGTAAAGCTCAACATAAAATGTCTGAAGCAACCAATAGACAGATCAGCAATAGCACAAAATGCAATTCCAAACAGACCGTAAAGAAATCAGATGAACATTCTGAATGGTTACCTGATGGTTGGATTGTGGACTCCAAAACACGAAAAAGTGGTGCACATATGGGATGTGGGTATAAGTGTTACATTGACCCAACTGGACGCAAATTCTACTCCAAGCCAGAGGTGTTACGTTATATTAAGACTATAAACATCAACAGTCACAGTTCCAAGAAGGAAAAGATGCGCAAAAGCAATGATGCAGGTGAGAAATCCACTGCTGAGGATTTACCACCTGAGCAGATAATAGATGTCAAGATTAGGAGGGGTAGCAATAGCTGTAGAATAAAGCCGGATGCAGTCGAGAAGTCCCAAGTTGAGGATTTACCACCTGGTTGGACGATAGAAGCCAAGGTTAGGAAGGGTGGTACTGGCAATAGGAAAGATCTGTTTTATATAGATCCGGTGAGTGGATATGTATTTCGCTCCAAGAAGGATGCATTACGCTATGTTAAGTCTGGTGATATAAGTTCGTGTGTGATTAAACCGTACAAGCAACAAATCCAAGATGAAGACGAAGTATCTAATGCAGATGAGAAGTCCACTATACAGGATTTACCACCTGGGCAGATGTCAGAAGTCAAAATTAGGAAGGGCGGTAATGACAAAAGGATAGATCCGGATTGGGTCGAGAAGTCCCAAGTTGAGGATTTACCACCTGGGTGGATAACAGAAGCCAAGGCTAGGAAGGGTGGTAGTGGCAAGAAGAAAGATCTGTTTTATTTAGATCCAGTGAGTGGATATGTATTTCGGTCCAAGAAGGATGCACTGCGCTATGTTAATTCTGGCGATATAGATACGTGCGTGCTTAAACCATATAAAAGAGGAATCCAAGATGAAGACGGAATAAGTCCATCATCTATTGGCAAAAGGCAGAAACTAACGCAGTCTGCAGCAAATCAACAGCTTGCTGTAGGTCAACGTGATGTGAAGAGCCAATCATTAGAGCATGCAACTGCACACACTCCCGAAATGATGAAAACATTTGATTCAGGTAGTTTAGCGCTAATAAAAGATGATATGCTAGAGAATGGCCACTTTGTGAATGTGATGGAGCATGCTAGTGAAAAGAATCACAGCAACAGTAGTTTATCCAAAACCAAGGAGTCCAATGTGGCTCGCCGTTTTTCACGGAGACTTTCTCGGGCTGAACCTGACCAATTGACTGACGTGGCCAATGAGCAGGCTCTTCAAGTTCCTAAAAGAAAGTTGGGAAAAAGTGTAAGTATTTTAGACACTGATTTGACAAATAAATCATCTCAGCAGCTGAGTGGTGTACTGGAAATTAAGCGTTCATATAAAGAGCAAGGAGAAGTGCTATTGAACTCAAAAAAATCCAGAACCAAGGAAGAGAAACAAACTTTTTGTCGTTCTTCAAAACGATTAGCTGGATTTCAACCCAAGCTGATGAGCAACTCTAGTTCCCAAAAAACATCTTATAAAAGTAAAAAATCTAAAGGCGATGTCAAAGCGACCTTGCAGCAAAGTGATGGTCAGCCAGTTACGGAGTTTGCAGATCATGCATCAATAAATGGAGAGTCGTCAAACAAAGGCAGAAAACTTCCCAAAGCCACACCCATAACTAGCAATCAACTGAAGAAATTTGATGACGAAGAAATAAATAACGATGGGAAATCAGAACTTGATCAATCCTTTGCATTTCATTATTCTTGGTCTGACCCATGCTTGGAATTTGCAATTCAGACCCTCACAGGTGCATTACCAGTTGAAGATTCAACTGACAATGGACAAACCAGGGTTTCTGAAACTGATACATCTCCCAAAAATCAGTTGGTTGAGAATGTTACAGGAAGCAGCAGTGACAAAACCTCACGTGTAAATTCAAAGCAATCCAAGAACAAAAAAGAGCTTACAGTGCCAAGGCGGTTGTCAAAGCGACTTGCTGGCAATGAACCCGAGGTACTTCCTACTGAAAAAGCTGCCAAATTCGCCCCTCAAAAGTCCTGCAATGACAAACTGGCTGCTACTGCGAATTTAACTAATGGAGTGTCTGGGTATCATCGTGACAGGGAAGAGTCCGAACTTGTTGTCCAGTCATCTGACAGGTTGAAAACATCATGTGGTGAATCATTGATCAAGAGTGAGAAGTCATATGATGCCCAAACGGTTCCCGATGAACAAATACAGAGGCATGAAGATGAAAATGCCGATGATGAAAGATCGTATTCACAGTTCCCCACACCTTTTGGGGACTCCTGGTCGGATCCTTGCCTAGAATTTGCAATTAAGACTCTTTCAGGTGATTTGCCAGTTGACGCACCAGCTGCGGACATTTTACCTGTTGTTACTCCTGATGTTAGTGATCCCCCAAATAAGGAGTCACTTCAGAGTGTGGAGCAGAAGAGCATCAATGCAGAAACTCATGAGAATCCCTACCAATCCCAGACCAAGAAAGAGTTCAATACTGTTTGCCACTCATCAAAACAAGACCTGAACCAGCCCGAGGTGACAACCTACTCCACATCTTTTGGAAATGATCCAAAGTTTGCAACTAGAGAGTCTTACAAGGATGAAGACAGTATAACCAGGAATTCTAACGAAAGAGAACCCCAGCGTATTAAATCTGGGAACGCACTAGAAATTGATATAAACAAAACAATTCTTGAAGAAGAACCACAACCTGAAACAATAAACTACGATAATTCTGACAGAGAATTCGGTGCTTCATTTATGGATTCTTGGTCAGATCCATGCCTAGAATTTGCATTTAATACTCTTTCAGGCTCAATACCAGTAGAAGAAAATATAACAATTCAAGCATGTTTCCAGGAACGTGCCCATAGCAATGGCCAAAGAGGGGGTTTCTCGACAGTTCCGGATTTTGGATTTTCCAGCATTTCTCATAGTGGTATCTCATTTCACAATAATATAGGGGAGAATTCCAAGTCAGTTCAACAGTCAACAGCGAGTTCTTCTTTCCTCCCCCAGGAAAAACAAGGCCTGAACGCTTTCTTCGGGGTTGATCCTCAAGAACAATATTTCCAGAATAATAATAATAATTTTCAGAGAAAGTGA 3135 0.4163 MGKAQHKMSEATNRQISNSTKCNSKQTVKKSDEHSEWLPDGWIVDSKTRKSGAHMGCGYKCYIDPTGRKFYSKPEVLRYIKTININSHSSKKEKMRKSNDAGEKSTAEDLPPEQIIDVKIRRGSNSCRIKPDAVEKSQVEDLPPGWTIEAKVRKGGTGNRKDLFYIDPVSGYVFRSKKDALRYVKSGDISSCVIKPYKQQIQDEDEVSNADEKSTIQDLPPGQMSEVKIRKGGNDKRIDPDWVEKSQVEDLPPGWITEAKARKGGSGKKKDLFYLDPVSGYVFRSKKDALRYVNSGDIDTCVLKPYKRGIQDEDGISPSSIGKRQKLTQSAANQQLAVGQRDVKSQSLEHATAHTPEMMKTFDSGSLALIKDDMLENGHFVNVMEHASEKNHSNSSLSKTKESNVARRFSRRLSRAEPDQLTDVANEQALQVPKRKLGKSVSILDTDLTNKSSQQLSGVLEIKRSYKEQGEVLLNSKKSRTKEEKQTFCRSSKRLAGFQPKLMSNSSSQKTSYKSKKSKGDVKATLQQSDGQPVTEFADHASINGESSNKGRKLPKATPITSNQLKKFDDEEINNDGKSELDQSFAFHYSWSDPCLEFAIQTLTGALPVEDSTDNGQTRVSETDTSPKNQLVENVTGSSSDKTSRVNSKQSKNKKELTVPRRLSKRLAGNEPEVLPTEKAAKFAPQKSCNDKLAATANLTNGVSGYHRDREESELVVQSSDRLKTSCGESLIKSEKSYDAQTVPDEQIQRHEDENADDERSYSQFPTPFGDSWSDPCLEFAIKTLSGDLPVDAPAADILPVVTPDVSDPPNKESLQSVEQKSINAETHENPYQSQTKKEFNTVCHSSKQDLNQPEVTTYSTSFGNDPKFATRESYKDEDSITRNSNEREPQRIKSGNALEIDINKTILEEEPQPETINYDNSDREFGASFMDSWSDPCLEFAFNTLSGSIPVEENITIQACFQERAHSNGQRGGFSTVPDFGFSSISHSGISFHNNIGENSKSVQQSTASSSFLPQEKQGLNAFFGVDPQEQYFQNNNNNFQRK* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0297 1044 Pfam Methyl-CpG binding domain 141 187 IPR001739 GO:0003677
Vra11g0297 1044 Pfam Methyl-CpG binding domain 32 82 IPR001739 GO:0003677
Vra11g0297 1044 Pfam Methyl-CpG binding domain 250 296 IPR001739 GO:0003677
Vra11g0297 1044 MobiDBLite consensus disorder prediction 499 570 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 745 760 - -
Vra11g0297 1044 PANTHER OS04G0193200 PROTEIN 620 1033 - -
Vra11g0297 1044 PANTHER OS04G0193200 PROTEIN 6 211 - -
Vra11g0297 1044 PANTHER OS04G0193200 PROTEIN 243 354 - -
Vra11g0297 1044 PANTHER OS04G0193200 PROTEIN 382 617 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 856 892 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 524 564 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 735 768 - -
Vra11g0297 1044 SUPERFAMILY DNA-binding domain 32 87 IPR016177 GO:0003677
Vra11g0297 1044 MobiDBLite consensus disorder prediction 88 107 - -
Vra11g0297 1044 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 28 100 IPR001739 GO:0003677
Vra11g0297 1044 SUPERFAMILY DNA-binding domain 250 298 IPR016177 GO:0003677
Vra11g0297 1044 MobiDBLite consensus disorder prediction 8 25 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 88 111 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 26 40 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 609 661 - -
Vra11g0297 1044 SUPERFAMILY DNA-binding domain 141 192 IPR016177 GO:0003677
Vra11g0297 1044 MobiDBLite consensus disorder prediction 609 646 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 499 513 - -
Vra11g0297 1044 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 241 313 IPR001739 GO:0003677
Vra11g0297 1044 MobiDBLite consensus disorder prediction 870 892 - -
Vra11g0297 1044 Gene3D - 1 115 - -
Vra11g0297 1044 Gene3D - 234 343 - -
Vra11g0297 1044 Gene3D - 117 218 - -
Vra11g0297 1044 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 132 204 IPR001739 GO:0003677
Vra11g0297 1044 MobiDBLite consensus disorder prediction 647 661 - -
Vra11g0297 1044 MobiDBLite consensus disorder prediction 1 44 - -
Vra11g0297 1044 PANTHER OS04G0193200 PROTEIN 382 617 IPR038945 -
Vra11g0297 1044 PANTHER OS04G0193200 PROTEIN 620 1033 IPR038945 -
Vra11g0297 1044 PANTHER OS04G0193200 PROTEIN 243 354 IPR038945 -
Vra11g0297 1044 PANTHER OS04G0193200 PROTEIN 6 211 IPR038945 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0297 Vra-Chr11 2106369 2116929 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0297 - - vra:106777576 2017.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0297 11 2106369 2116929 Vra11g0297 11 2106369 2116929 ECH
Vra11g0297 11 2106369 2116929 Vra7g3477 7 54119080 54126392 PCT