Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00089 ATGGATGAAAACTCTATATCTAGGTTTCCGGTGATCACTATATTGGTCAACTACCACTACAAAATGGGGAGTACCAGAAAAAACTCTAAGCAAGTCTTCATGAAAACAAATGAAACTCATGGTTGGTTGCCTGATGGCTGGTTCATGGAGTCCAAAATAAGGAAGAGCGGTGCACGAGTCGGAACTGAATACAAGTGTTATGTGGACCCATCATCTAGAAGTAAATTTTATTCCAAGCCAGAGGTACTTAGATATCTCAAAACAAGGAAGCAAAATGCCGATAGTTCAGATCAGCAGAATGAGGGCGCTGCCATGGAAAGTACAAACAAGAGTGACAAAAGGCCCTTACTTGTGTCTGAGCCAGTCCCCCATCATTCAAATTCAGCAGAAGAAAGCGACCAGGAATACAGACAAAGGAGAAGTGGTTCCACCTCGACTAGTGACAAAACTGTAGTAGTGGAGAGGGAAAAAATAGAGGATTTGCCCGATGGATGGATAAAGGAAACCAGGACTCGAGAAACAACCCATGGCATCAGAAAAGATCCTTATTACAAAGACCCAGTTAGTGGACGTGTATTTCGCTCAAAGAAGGAAGTTTTCCGCTTTCTAGGAGACAAATTCGAACTGTCATCTGCTGCAAAATCCCAGGAACTGAAGTATTCTTCAACTAGAAGAGAGCTTTCCGAAGTAGGCAAGGAAGAATCTGATTTAGCTGATGTAGATGTTTCGGTAGCTAATATGCAAAAGGAAGGGCAAGATAATTGCTTGACCCAAACTGAAGCAGCCTTTAGAATGCAGTTGCCAAAGAGTGCAACTGCAGAGCCTTTTGGTACAGAGGAAAACTTTGATCGATCTACTTCAGCACTGTTAAAAGATGAAGACTTTGCTGAAGAGTTAGACATTAACGTCTCTGCAGAGGCTGGGGAAGTGACTCCTGGAGCTGATGAGCTAGCAAATACTGATATTGTGATTGGGAAGGTGCAGGGCACTTCTAAGAAATCAAGGAGCAAAGCTGGAGCAAGCAATGAGAAGAATGTTGGCAGACGTTCTCGGTACTCAAGGAGACTTTCTGGGGTTGAACCGGAACTAGGGACAAAGACTATGGCCAACGAACAAGATCTTCTGGTTCTAAATGGAAAGCCATCACAAAATAGAACCATTTTGAGCAACAATTTGGCTAGTGAAGAGTCTCAAAAACTGGTATCTGCCCAAGGTATTCAACACAGTTCTGATGCTCCCGTTTCTGTTAGTGCTGGACTTGATGGAGGTACTACAACTGGGAGGCCTAACGACAGATTGGTTGTCGAAGTAAAAATGCAAAAACTAGAAACTGGGAGAATTAATGATAAGAAGCTTGAAGCAAAACATTGTGTGCCACCTGGCCTAGATTTCACAACAAAACAAGCTTCCAGTGAATTACCAGTAGAAGACAGTCCTCATACTGGCAGTGCTTTAGCTTTTAAAGAGGATCTTGAACAGGAAGATAAGTTGCTATACAGAAGGACTCAAAAAGTTGATAATGCAAATTCTCGGATCAATACCCCCAAGAATAAGAAAGAGAATAGCTTACCTCGCAGGTCTTCGAAACGTCTTGCTGGGGTTGAACCTGAGCTAATAGGCAACTCCATTTCACGTGAAAAAGCTCTGGAATATACGAGTAAAAGGTCTAAAAAGGAAGTCACTGTGGTATCTTCAGAAACCATGGTATCTCAGCAGCTTGAGGATCCAGAAGCTGAAAATTTGGAGGATGAGAAAGGAGATTCTAACCTTTCCTTTTCATTCCATTATTCCTGGTCAGACCCATGCCTGGAATTTGCTATCAAAACTCTTACTGGTGCATTGCCGGACGAGGACACTGTTGATGTCAACCCTATTTTGAATATGGGAAAAAAGAACTTGCCACAAGGTATGAATGAAAGTGGCATAAAAAGCTATCAGGTGAAAACAAAAAAATCCAAGGAGCTTAATTTGCCTTCTCGGTCCTCCAAGCGACTTGCTGGCCAGAGACCTGAACTTGTCGCAAAACCATCCAGTGAAAGAGCTCTTGAATACACCCCTAGAAAATCATACAAGGAATCACGGAAAAAATTAAATCAGCAGATTGAGGCTGGCAGTAAAATTGATCTTACTCGTGTTAGTGACTGCGTGGAGAACACATCTGGTATCCAGCTATCAAACCCCAGTGACATGAGTTGCAAAGGTCAAGCTACTTGTGAAGAGCGACAGAAGAATATGGAAGTTGAAGAAATAGAGGGTGAGAAGTCAGATCCTCAGACATCCTTTCCATTTTGTGAATCATGGTCTGATCCATGCATAGATTTTGCAATTAAGACTCTTACAGGTGCATTATCAGAAGAAGATACTCCTCACGTGTTACGTATTAGCAATCCTGAATCTAATACTGTGCCGTACAGAGAGAATTCTCAGAATATGGGCGAAAGGAGCATAGCCAATCAGGTCTGTCAGCCTGCAAACCTGCCAGCGACTGAACCTGAGTGGATGGTTTGCTCCACGTCTAGTAACAGTAATAAAAAACAAGCAACTGAACAGTCTTTTGGGGAAGAAGCAAAGGTAGAAGGGGGAGCAATTAATGGAGCATTTCAGCATCTAGAAACTAGAGGAGAAACGGAATTGGGAAAGTTTGATTCTGCTGCTGCAACAACATCAATGCATGAAGCATCCTCGGAGAAGATTCGGAATGATTTTGCTTGCCAAAATGTTCCAGAGGTACCGAACTCTGGTTCGTTTTTGGAGTCTTGGTCAGATCCATGCTTGGACTTTGCAATTAAGACCCTTACTGGTGGTGAAGAGGAAAATTCAGAAATTCCGGGTTATCTCCAGGAAGTGCATACATCTGCCACTCAGTCCCATGCTAGCTCAGTATTGCCAGATCTTGGATTGCCTGCTTTTTTCCAAAATGATATAGCATCCCACTTTGATGTACCAGAGAAATCTGGGGGTGTTCAGCAGTTGTTCAATATGCCGGTGGTGGCACCAGGAGATGCGAGCTTGGCAAATTGCGCTGGTACTGATTCTTCACGTCGGTATTTACAGAGCAGTAAGAATATGCATGAAGGGAAACTTTTACCTTAG 3093 0.429 MDENSISRFPVITILVNYHYKMGSTRKNSKQVFMKTNETHGWLPDGWFMESKIRKSGARVGTEYKCYVDPSSRSKFYSKPEVLRYLKTRKQNADSSDQQNEGAAMESTNKSDKRPLLVSEPVPHHSNSAEESDQEYRQRRSGSTSTSDKTVVVEREKIEDLPDGWIKETRTRETTHGIRKDPYYKDPVSGRVFRSKKEVFRFLGDKFELSSAAKSQELKYSSTRRELSEVGKEESDLADVDVSVANMQKEGQDNCLTQTEAAFRMQLPKSATAEPFGTEENFDRSTSALLKDEDFAEELDINVSAEAGEVTPGADELANTDIVIGKVQGTSKKSRSKAGASNEKNVGRRSRYSRRLSGVEPELGTKTMANEQDLLVLNGKPSQNRTILSNNLASEESQKLVSAQGIQHSSDAPVSVSAGLDGGTTTGRPNDRLVVEVKMQKLETGRINDKKLEAKHCVPPGLDFTTKQASSELPVEDSPHTGSALAFKEDLEQEDKLLYRRTQKVDNANSRINTPKNKKENSLPRRSSKRLAGVEPELIGNSISREKALEYTSKRSKKEVTVVSSETMVSQQLEDPEAENLEDEKGDSNLSFSFHYSWSDPCLEFAIKTLTGALPDEDTVDVNPILNMGKKNLPQGMNESGIKSYQVKTKKSKELNLPSRSSKRLAGQRPELVAKPSSERALEYTPRKSYKESRKKLNQQIEAGSKIDLTRVSDCVENTSGIQLSNPSDMSCKGQATCEERQKNMEVEEIEGEKSDPQTSFPFCESWSDPCIDFAIKTLTGALSEEDTPHVLRISNPESNTVPYRENSQNMGERSIANQVCQPANLPATEPEWMVCSTSSNSNKKQATEQSFGEEAKVEGGAINGAFQHLETRGETELGKFDSAAATTSMHEASSEKIRNDFACQNVPEVPNSGSFLESWSDPCLDFAIKTLTGGEEENSEIPGYLQEVHTSATQSHASSVLPDLGLPAFFQNDIASHFDVPEKSGGVQQLFNMPVVAPGDASLANCAGTDSSRRYLQSSKNMHEGKLLP* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00089 1030 Gene3D - 22 114 - -
Pte12g00089 1030 Gene3D - 121 239 - -
Pte12g00089 1030 Pfam Methyl-CpG binding domain 159 206 IPR001739 GO:0003677
Pte12g00089 1030 Pfam Methyl-CpG binding domain 36 91 IPR001739 GO:0003677
Pte12g00089 1030 MobiDBLite consensus disorder prediction 328 367 - -
Pte12g00089 1030 SUPERFAMILY DNA-binding domain 156 209 IPR016177 GO:0003677
Pte12g00089 1030 CDD MBD 161 208 - -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 681 697 - -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 503 517 - -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 501 531 - -
Pte12g00089 1030 SUPERFAMILY DNA-binding domain 38 91 IPR016177 GO:0003677
Pte12g00089 1030 PANTHER OS04G0193200 PROTEIN 17 622 IPR038945 -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 645 697 - -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 89 154 - -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 562 585 - -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 337 356 - -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 399 429 - -
Pte12g00089 1030 MobiDBLite consensus disorder prediction 399 424 - -
Pte12g00089 1030 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 151 225 IPR001739 GO:0003677
Pte12g00089 1030 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 33 107 IPR001739 GO:0003677
Pte12g00089 1030 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00089 Pte-Chr12 766345 773017 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00089 - - aprc:113854032 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00089 12 766345 773017 Pte12g00089 12 766345 773017 RCT