Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0422 ATGGTTGAGAATTCGCCGGACTGGATTCCAGAGGGATGGACGGTACAAGTCAAACTGGCAAAGAATGGCCGGAACGTTAAGCTTGGAATTAAAACAAAAAAATTCCCTGACTGGTTACCTAATGGCTGGATCCTCGAGTTGAAAACTCAACGGAGTGGTTCATGTGTTGGTAAACAATACAAGTGTTATCTTGATCCATCAACTGGATACAGATTCTATTCCAAGCCAGATGTGTTCCGATATCTCAAAACCATAAAGCACAATAGTTGCACATCAAGACAGAAGAAAGTTGGACCTGGCATGCCTTCTTTAGGCAAGGTTGTAATTGAAAGGTCTACAGCGGATGGGTTACCAGCAGGGTGGATAAAGGAAATCAAAATTAGAATGAATGAAAATGGAATCCGAAGAGACCCGTATTATACGGATCCTGTGAGTGGGTATGTTTTCCGATCCAGAAAAGATGTCTTTCGCTATCTAAAAACTGGAGAGATTAGTAGGCATGCATTCAAACCAAAGAATAAGTGCATCAATGTTCCGGAATTGCCAAATGATGAGATCTCTCCACCACCTGGAGCTAAAAGGCAGAAATTAATGCACCAGAAAACCAGGCGACGCCTTTTCTCAGCAACTGCTTCTGCAGATACAGGAAGTTCTGAAATGAGCAACTTATCCTTGCCAGAAAATCAGGGCTCAAGGCAAACCAAGCAGCTATTTTCTAAACCTAAGTTTGCTTTGGAGCCCCCAACTGAAACTCTCCAAGAGAAGCTTCTGGTGGAGAATGAAAAATATGCCGAATCTAAGAAAAGCTCTGGTAGGAGGAATTCAGATCTGCAAAAGGACAAAGGTTCCAAGAGAAAATCAAAAAACAAAGACTGTAACTTGCCTTGCCGTTCATCAAAACGGCTTGCTGGGCTCAAACCCGACCTGGTAGGCAACTCAGGATCCAGCGAACAGGCTCTTGCAGTTGCAGATAAGATCTCTGGTAAAAGTGAAGTAATTCCAGCTCTAGGTGTGGTAATGGGCAGTTTGGACAATACGGCATGCTGTCAACTTGAGGTTGTCCTAGAAGCAGAGCCTGGACATCATGCTTCCAGAGCCATAGAAGCTCCATCAGATGTAGAGCAATCAAAGAAAGACAATAGGCATCTTGAAGATGAAGCTGTTCAAGAAGAGGAAGCTGGGAAACTGGAGACAGGGAAAAAGACTGGTGATGAGCCGGAGCTGCCACCAATGGACTTCCCTTTTATGGATGTCTGGTCAGATCCATGCCTAGAATTTGCGTTCAAAACTCTCACGGGTGCTATACCCATAGAAGATAATCTGGAAATTGAGGGTTACTTTCAGCAACAAATTGACTCTTCTCACACCCAGAACAGTAGCCTGACACTGCCAGATTTTGGTTTACCAAGTTCCCAGTTTGATGCACAAGAAAAATCTGTACCCAGACAGCACTTTGCTTCAAAACCATCAGTTTTGCCCAAGGAAATGTAA 1491 0.4373 MVENSPDWIPEGWTVQVKLAKNGRNVKLGIKTKKFPDWLPNGWILELKTQRSGSCVGKQYKCYLDPSTGYRFYSKPDVFRYLKTIKHNSCTSRQKKVGPGMPSLGKVVIERSTADGLPAGWIKEIKIRMNENGIRRDPYYTDPVSGYVFRSRKDVFRYLKTGEISRHAFKPKNKCINVPELPNDEISPPPGAKRQKLMHQKTRRRLFSATASADTGSSEMSNLSLPENQGSRQTKQLFSKPKFALEPPTETLQEKLLVENEKYAESKKSSGRRNSDLQKDKGSKRKSKNKDCNLPCRSSKRLAGLKPDLVGNSGSSEQALAVADKISGKSEVIPALGVVMGSLDNTACCQLEVVLEAEPGHHASRAIEAPSDVEQSKKDNRHLEDEAVQEEEAGKLETGKKTGDEPELPPMDFPFMDVWSDPCLEFAFKTLTGAIPIEDNLEIEGYFQQQIDSSHTQNSSLTLPDFGLPSSQFDAQEKSVPRQHFASKPSVLPKEM* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0422 496 Gene3D - 104 208 - -
Vvi2g0422 496 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 107 174 IPR001739 GO:0003677
Vvi2g0422 496 Pfam Methyl-CpG binding domain 37 85 IPR001739 GO:0003677
Vvi2g0422 496 Pfam Methyl-CpG binding domain 116 163 IPR001739 GO:0003677
Vvi2g0422 496 Gene3D - 29 103 - -
Vvi2g0422 496 MobiDBLite consensus disorder prediction 455 496 - -
Vvi2g0422 496 MobiDBLite consensus disorder prediction 205 238 - -
Vvi2g0422 496 MobiDBLite consensus disorder prediction 180 245 - -
Vvi2g0422 496 MobiDBLite consensus disorder prediction 455 478 - -
Vvi2g0422 496 MobiDBLite consensus disorder prediction 363 408 - -
Vvi2g0422 496 MobiDBLite consensus disorder prediction 262 299 - -
Vvi2g0422 496 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Vvi2g0422 496 Coils Coil 373 393 - -
Vvi2g0422 496 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 29 102 IPR001739 GO:0003677
Vvi2g0422 496 SUPERFAMILY DNA-binding domain 36 88 IPR016177 GO:0003677
Vvi2g0422 496 MobiDBLite consensus disorder prediction 363 407 - -
Vvi2g0422 496 MobiDBLite consensus disorder prediction 262 295 - -
Vvi2g0422 496 PANTHER OS04G0193200 PROTEIN 2 332 IPR038945 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0422 Vvi-Chr2 3529935 3538331 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0422 - - vri:117934074 967.992