Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1071 . . Adu06g01944 . . . Ahy6g1790 . . . . . . . . . Car03g01942 Cca07g00558 . . . . Gma19g01161 . Gso19g1016 . . . . Lan10g0787 . . Lapu1g00347 . . . . . Lja1g1499 Mal3g3264 . . . Mtr7g2434 Phac1g01438 . . Psa3g1978 . Pumo5g02409 . . Spst1g03592 . . Tpr6g1261 . Tsu07g03109 Vian2g01750 Vifa5g02115 Vimu6g03307 . . .
Pvu1g1072 . . Adu06g01946 . . Ahy16g2082 . . . . . . . . . . . Cca07g00559 . . . . Gma19g01159 . Gso19g1015 . . . . . . . Lapu1g00348 . . . . . Lja1g1500 Mal3g3262 Mepo3g02624 Mesa25g01517 . Mtr7g2433 . . . Psa3g1979 . Pumo5g02408 . . Spst1g03593 Ssu4g1683 . Tpr6g1260 . Tsu07g03106 Vian2g01749 Vifa5g02114 Vimu6g03308 . . .
Pvu1g1073 . . Adu06g02235 Aed9g1091 . . . Aip06g02646 . . . Apr4g1540 Arst6g02899 . . . Car03g01790 . . . . . Gma19g01010 . . . . . . . . . Lapu1g00503 Lasa3g02287 . . . . Lja1g1680 . . . . . . . . Psa3g2161 . . . . . Ssu4g1843 . Tpr6g1044 . Tsu07g02878 . . . . Vivi6g03299 .
Pvu1g1074 . . . . . . . . . . . . . . . . . . . . . . . . Gso19g1013 . . . . . . . . . . . . . . . . . . . . Phco2g01310 . . . . . . Spst1g03595 Ssu4g1684 . . . . . . Vimu6g03311 . . .
Pvu1g1075 . . Adu06g01951 . . Ahy16g2084 . . . . . . . . . . . Cca07g00561 . . . . Gma19g01158 . Gso19g1012 . . . . . . . Lapu1g00354 . . . . . Lja1g1502 Mal3g3261 . . . Mtr7g2432 . Phco2g01309 . Psa3g1984 . Pumo5g02406 . . Spst1g03597 Ssu4g1686 . Tpr6g1259 . Tsu07g03105 Vian2g01744 . Vimu6g03313 . . .
Pvu1g1076 . . . . . Ahy16g2085 . . . . . . . . . . . Cca07g00563 . . . . . . Gso19g1011 . . . . . . . Lapu1g00355 Lasa3g02486 . . . . Lja1g1503 . . . . . . Phco2g01308 . . . Pumo5g02400 . . . Ssu4g1687 . Tpr6g1258 . . Vian2g01741 Vifa5g02113 Vimu6g03316 . . .
Pvu1g1077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1078 . . . . . . . . . . . . . . . . . . . . . . . Gma03g01128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g1518 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1080 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g1071 Chr1 23998627 24001807 -
Adu Adu06g01944 Chr06 82342328 82354765 -
Ahy Ahy6g1790 Chr6 87380040 87383581 -
Car Car03g01942 Chr03 65455558 65459662 +
Cca Cca07g00558 Chr07 7943272 7947232 -
Gma Gma19g01161 Chr19 40240945 40245482 +
Gso Gso19g1016 Chr19 37791736 37796597 +
Lan Lan10g0787 Chr10 10819102 10828047 +
Lapu Lapu1g00347 Chr1 12833156 12836813 -
Lja Lja1g1499 Chr1 16173608 16177664 -
Mal Mal3g3264 Chr3 108755551 108760280 +
Mtr Mtr7g2434 Chr7 40778193 40782814 +
Phac Phac1g01438 Chr1 17145541 17150224 -
Psa Psa3g1978 Chr3 175760519 175764507 -
Pumo Pumo5g02409 Chr5 67046594 67086312 +
Spst Spst1g03592 Chr1 45198785 45207009 -
Tpr Tpr6g1261 Chr6 13028215 13035682 +
Tsu Tsu07g03109 Chr07 37046569 37050800 +
Vian Vian2g01750 Chr2 35634175 35636414 +
Vifa Vifa5g02115 Chr5 700320901 700323323 +
Vimu Vimu6g03307 Chr6 29610577 29611855 -
Pvu Pvu1g1072 Chr1 24309312 24315443 -
Adu Adu06g01946 Chr06 82424275 82427898 -
Ahy Ahy16g2082 Chr16 115865985 115881649 -
Cca Cca07g00559 Chr07 7961348 7965801 +
Gma Gma19g01159 Chr19 40143860 40223722 +
Gso Gso19g1015 Chr19 37772719 37775156 +
Lapu Lapu1g00348 Chr1 12887009 12891002 +
Lja Lja1g1500 Chr1 16200621 16205166 -
Mal Mal3g3262 Chr3 108738051 108741923 +
Mepo Mepo3g02624 Chr3 36189268 36190124 +
Mesa Mesa25g01517 Chr25 18335890 18339348 -
Mtr Mtr7g2433 Chr7 40768490 40772277 +
Psa Psa3g1979 Chr3 175838052 175840922 -
Pumo Pumo5g02408 Chr5 66980938 66986742 +
Spst Spst1g03593 Chr1 45230360 45233230 -
Ssu Ssu4g1683 Chr4 29554274 29556430 +
Tpr Tpr6g1260 Chr6 13007597 13011959 +
Tsu Tsu07g03106 Chr07 37022192 37030954 +
Vian Vian2g01749 Chr2 35619095 35623421 +
Vifa Vifa5g02114 Chr5 700280068 700282331 +
Vimu Vimu6g03308 Chr6 29611859 29614235 -
Pvu Pvu1g1073 Chr1 24430819 24433790 -
Adu Adu06g02235 Chr06 93357116 93374397 +
Aed Aed9g1091 Chr9 8072024 8090883 +
Aip Aip06g02646 Chr06 116160829 116174615 +
Apr Apr4g1540 Chr4 16712660 16728753 +
Arst Arst6g02899 Chr6 92575769 92589369 +
Car Car03g01790 Chr03 63786346 63796385 -
Gma Gma19g01010 Chr19 37567440 37602142 -
Lapu Lapu1g00503 Chr1 16470735 16486628 +
Lasa Lasa3g02287 Chr3 541985668 541993159 +
Lja Lja1g1680 Chr1 18529799 18537285 +
Psa Psa3g2161 Chr3 190233565 190242192 -
Ssu Ssu4g1843 Chr4 33700785 33721957 +
Tpr Tpr6g1044 Chr6 9761046 9771274 -
Tsu Tsu07g02878 Chr07 33968235 33976427 -
Vivi Vivi6g03299 Chr6 123822516 123829608 -
Pvu Pvu1g1074 Chr1 24847718 24855325 -
Gso Gso19g1013 Chr19 37711377 37737425 +
Phco Phco2g01310 Chr2 41258600 41266222 +
Spst Spst1g03595 Chr1 45268197 45277101 -
Ssu Ssu4g1684 Chr4 29598833 29615331 -
Vimu Vimu6g03311 Chr6 29647673 29655677 -
Pvu Pvu1g1075 Chr1 25639617 25641982 -
Adu Adu06g01951 Chr06 82607615 82618472 -
Ahy Ahy16g2084 Chr16 116067465 116071119 -
Cca Cca07g00561 Chr07 8000835 8007030 +
Gma Gma19g01158 Chr19 40135220 40139704 +
Gso Gso19g1012 Chr19 37692291 37696458 +
Lapu Lapu1g00354 Chr1 13052569 13057252 -
Lja Lja1g1502 Chr1 16222152 16227522 -
Mal Mal3g3261 Chr3 108696450 108700793 +
Mtr Mtr7g2432 Chr7 40757047 40760806 +
Phco Phco2g01309 Chr2 41246936 41250013 +
Psa Psa3g1984 Chr3 176232116 176243883 +
Pumo Pumo5g02406 Chr5 66963562 66967503 +
Spst Spst1g03597 Chr1 45339397 45347308 -
Ssu Ssu4g1686 Chr4 29638030 29661271 -
Tpr Tpr6g1259 Chr6 12992173 12996027 +
Tsu Tsu07g03105 Chr07 37012282 37016285 +
Vian Vian2g01744 Chr2 35550381 35553463 +
Vimu Vimu6g03313 Chr6 29694788 29696314 -
Pvu Pvu1g1076 Chr1 25642472 25643288 -
Ahy Ahy16g2085 Chr16 116314842 116326862 -
Cca Cca07g00563 Chr07 8077067 8081724 -
Gso Gso19g1011 Chr19 37683409 37688377 +
Lapu Lapu1g00355 Chr1 13103325 13108351 -
Lasa Lasa3g02486 Chr3 561376225 561378459 +
Lja Lja1g1503 Chr1 16246713 16251627 -
Phco Phco2g01308 Chr2 41227277 41230507 +
Pumo Pumo5g02400 Chr5 66668701 66672547 +
Ssu Ssu4g1687 Chr4 29682680 29687055 -
Tpr Tpr6g1258 Chr6 12982333 12986562 +
Vian Vian2g01741 Chr2 35519440 35522537 +
Vifa Vifa5g02113 Chr5 700140482 700149056 +
Vimu Vimu6g03316 Chr6 29723630 29726447 -
Pvu Pvu1g1077 Chr1 25693340 25693954 +
Pvu Pvu1g1078 Chr1 25706950 25709913 -
Gma Gma03g01128 Chr03 36497390 36500706 -
Pvu Pvu1g1079 Chr1 25716050 25716546 +
Lja Lja1g1518 Chr1 16433344 16433973 +
Pvu Pvu1g1080 Chr1 25721516 25722283 +
Adu Adu06g01951 Chr06 82607615 82618472 -
Ahy Ahy16g2085 Chr16 116314842 116326862 -
Ahy Ahy6g1790 Chr6 87380040 87383581 -
Car Car03g01942 Chr03 65455558 65459662 +
Cca Cca07g00563 Chr07 8077067 8081724 -
Gma Gma19g01159 Chr19 40143860 40223722 +
Mal Mal3g3262 Chr3 108738051 108741923 +
Mepo Mepo3g02624 Chr3 36189268 36190124 +
Mesa Mesa25g01517 Chr25 18335890 18339348 -
Mtr Mtr7g2433 Chr7 40768490 40772277 +
Pumo Pumo5g02400 Chr5 66668701 66672547 +
Ssu Ssu4g1687 Chr4 29682680 29687055 -
Tpr Tpr6g1259 Chr6 12992173 12996027 +
Tsu Tsu07g03106 Chr07 37022192 37030954 +
Vian Vian2g01741 Chr2 35519440 35522537 +
Vifa Vifa5g02113 Chr5 700140482 700149056 +
Adu Adu06g01946 Chr06 82424275 82427898 -
Ahy Ahy16g2084 Chr16 116067465 116071119 -
Cca Cca07g00561 Chr07 8000835 8007030 +
Gma Gma19g01161 Chr19 40240945 40245482 +
Mtr Mtr7g2434 Chr7 40778193 40782814 +
Pumo Pumo5g02406 Chr5 66963562 66967503 +
Tpr Tpr6g1261 Chr6 13028215 13035682 +
Tsu Tsu07g03109 Chr07 37046569 37050800 +
Vian Vian2g01744 Chr2 35550381 35553463 +