Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1013 ATGGCAGCCAAAACATCTACCAACGGCACTCATTATTCTCGCTCTCGCCCCGAGTACATTCCAAACCGCATCCCCGACCCGCATTATGTCCGCATCCTGGACACCACGCTTCGCGACGGCGAGCAAGCCCCCGGAGCCTCCATGGTTTCCAGCCAGAAGCTCCGGATTGCTCGCCAGCTCGCGAAGCTTGGCGTCGATGTCATCGAAGGAGGCTTTCCTTCAGCGTCGCAGGAAGACTTCAATGCTGTCAAGATGATAGCACAAGAAGTTGGCAACAACTGTGATGCTGATGGCTATGTTCCCGTCATTGCCGCCCTCTGTAGGTGCAATGAGAAGGACATTGCCACAGCGTGGGAGGCTCTGAAATACGCCAAGAGGCCGAGGCTTATGCCTTTCATAGCAGTGAGCCCCATTCACATGGAGTACAAGCTCAATAAGACTAAAGAAGAGGTGCTTCAAATAGCTAAAGATATGATCAAATTTGCACGCAGTTTAGGTTGCAGTGACATCCAGTTCTGTTCCGAAGATGCAGCCAGATCGGATAGAGAGTTTCTTTATCAAATTTTGGAAGAAGTTATCAAAGCTGGGGCAACAACTTTGGGCATAGGTGACACTGTGGGCATAACAATGCCATTCGAGATTAGACAATTGATTGCTGATATAAAAGCCAATGTCCCTGGAGCAGAAAATGTTATTATTTCTATGCACTGTCATAATGATCTTGGACATGCTACTGCAAACGCAATAGAGGCTGCTCAAGCTGGTGCAATGCAATTAGAAGTAACAATTAATGGGATTGGTGAAAGGGCTGGTAATGCCTCATTAGAAGAGGTTGTGATGGCCCTAAAATGCAGGGGAGATCAAGTCTTAGGTGGTTTGTATACTGGAATTAATACAAGGCACTTATTGAAGACAAGCAAGATGGTCGAAGAGTTTTCTGGTATGTATTTACAACCACACAAAGCTGTTGTAGGTGATAATGCCTTTCTCCATGAAAGTGGCGTTCACCAGGCTGGATTGTTAAAGCATAGAGCTACATATGAAATAATGTCTCCCGAAGATATTGGTCATGAAAAGTCCAGTGGAGTTAATATGGTACTAGGGAAGCTAAGTGGACGCCAAGCTTTGAAAAGTCGTCTCAAAGAGCTTGGCTATGAACTTAGGGATGAAGAAGTTGAGAGTGTGTTTAGGAACTTCAAAGCAATAGCCGAGAAAAAAAAGAGAGTTACCGATGTTGACCTCAAAGCATTGGTGTCAAATCAAGTTTCTCATGATGAACCTATTTGGAAGCTTGATGGTTTGCAGGTGACTTGTGGAACTATGGGTTCTTCAACAGCAACTATCAAACTTGTCACTAGTGATGGTATCACACATGTTGCTTGTTCTGTTGGTGTAGGACCAGTAGATTCAGCTTACAAGGCTATCAATCTCATCGTGAAGGAAACTGTAAAAGTACTTGAGTACTCACTAAGTACAGTTACAGAAGGCACTGATGCAATTGCAACTACACGTGTTGTAATTCGTAGAGAGAATAAGCAATCACCAACTCCTGCTTTGAATGGAAACGTAATTTATCCAACATTTAGTGGAACCGGAGAAGGGGTGGATGTTGTTACTTCAAGTGTAGAGGCTTATCTTACTGCACTAAACAAAATGCTCGATTTAAAGGAATGA 1674 0.4421 MAAKTSTNGTHYSRSRPEYIPNRIPDPHYVRILDTTLRDGEQAPGASMVSSQKLRIARQLAKLGVDVIEGGFPSASQEDFNAVKMIAQEVGNNCDADGYVPVIAALCRCNEKDIATAWEALKYAKRPRLMPFIAVSPIHMEYKLNKTKEEVLQIAKDMIKFARSLGCSDIQFCSEDAARSDREFLYQILEEVIKAGATTLGIGDTVGITMPFEIRQLIADIKANVPGAENVIISMHCHNDLGHATANAIEAAQAGAMQLEVTINGIGERAGNASLEEVVMALKCRGDQVLGGLYTGINTRHLLKTSKMVEEFSGMYLQPHKAVVGDNAFLHESGVHQAGLLKHRATYEIMSPEDIGHEKSSGVNMVLGKLSGRQALKSRLKELGYELRDEEVESVFRNFKAIAEKKKRVTDVDLKALVSNQVSHDEPIWKLDGLQVTCGTMGSSTATIKLVTSDGITHVACSVGVGPVDSAYKAINLIVKETVKVLEYSLSTVTEGTDAIATTRVVIRRENKQSPTPALNGNVIYPTFSGTGEGVDVVTSSVEAYLTALNKMLDLKE* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1013 557 Pfam HMGL-like 30 309 IPR000891 GO:0003824
Gso19g1013 557 PANTHER HOMOCITRATE SYNTHASE-RELATED 1 441 - -
Gso19g1013 557 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 233 246 IPR002034 GO:0019752|GO:0046912
Gso19g1013 557 CDD DRE_TIM_IPMS 32 311 - -
Gso19g1013 557 MobiDBLite consensus disorder prediction 1 20 - -
Gso19g1013 557 MobiDBLite consensus disorder prediction 1 15 - -
Gso19g1013 557 Pfam LeuA allosteric (dimerisation) domain 409 553 IPR013709 GO:0003852|GO:0009098
Gso19g1013 557 PANTHER 2-ISOPROPYLMALATE SYNTHASE-RELATED 1 441 - -
Gso19g1013 557 TIGRFAM leuA_bact: 2-isopropylmalate synthase 30 550 IPR005671 GO:0003852|GO:0009098
Gso19g1013 557 Coils Coil 546 557 - -
Gso19g1013 557 Gene3D - 434 553 IPR036230 -
Gso19g1013 557 ProSiteProfiles Pyruvate carboxyltransferase domain. 30 303 IPR000891 GO:0003824
Gso19g1013 557 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 451 552 IPR036230 -
Gso19g1013 557 Coils Coil 373 393 - -
Gso19g1013 557 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 1. 37 53 IPR002034 GO:0019752|GO:0046912
Gso19g1013 557 SUPERFAMILY Aldolase 27 327 - -
Gso19g1013 557 SMART LeuA_dimer_2 408 553 IPR013709 GO:0003852|GO:0009098
Gso19g1013 557 Gene3D - 317 431 - -
Gso19g1013 557 Gene3D Aldolase class I 26 314 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1013 Gso-Chr19 37711377 37737425 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1013 K01649 - gmx:100776166 1085.86