Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00561 ATGGAGGGAGAACTGAAGCAGAAGCTGCTGAAGAGTGCATTAGAAGAAGAAGAGGAGGAACTAACACTAGTGAAGAGGGTGTGGAACGAGAGCAAGGTGATGTGGGTGGTGGCAGCACCAGGCATTTTCAGTAGATTCTCCACCTTTGGTCTCAATGTTATAAGCCAAGCATTTATTGGTCATATTGGTTCAAGGGAACTCGCTGGCTTTGCTCTTGTCTTCACTGTTCTCGTTAGGTTCGCCAATGGTATTCTGTTGGGAATGGCTAGTGCACTGTCAACACTTTGCGGACAAGCATACGGTGCTAAAGAATATGGCATGATGGGAGTGTATCTTCAAAAATCATGGATAGTTTTGTTCTTAACTGCAACCTGTCTTCTTCCGCTATTCATCTTCACAAGTCCAATTTTGATGTTGTTAGGCCAAGATGAAAGTATAGCACAAATGGCAGGAATCATTTCTAGTTGGTCAATTCCTATTTTATTTGCTTTTATTGTCTCGTTCACTTGCCAGATGTTTCTGCAATCTCAAAGCAAGAATACCATCATTGCATTCTTGGCCGGTTTCTCAATAATTATTCATTTGTTCCTCTCTTGGCTATTGACAATAAAATTCAAGTTCGAAATTGCTGGTGCAATGACTTCAATGAGTTTGGCATTCTGGATTCCTAATATTGGTCAACTAATTTTTATTACATGTGGTTGGTGCTCTGATACATGGAAAGGTTTCTCATTTTTAGCGTTCAAAGATCTTTGGCCTGTTGTCAAGCTTTCCCTTTCATCTGGTGTCATGTTATGTCTTGAGCTCTGGTACAACACAATATTGGTTCTTTTAACGGGCAACATGAAAAATGCAGAGGTCCAAATTGATGCTTTATCTATATGCCTCAACATCAATGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCTGTGAGTGTTCGAGTGGCAAATGAGCTTGGAAAAGGAAGCTCCAAAGCTGCAAAATTCTCGATAGTTGTGACAGTGCTTACATCTTTTGCAATTGGATTCGTTCTCTTCTTATTTTTCTTATTTTTTAGAGAAAGACTTGCTTACATATTTACCTCAAATAAAGATGTCGCTAATGCTGTTGGAGATTTGTCACCTTTGTTGGCAATTTCTATTCTACTAAATAGTGTCCAACCTGTACTCTCAGGAGTTGCTATTGGAGCAGGGTGGCAAAGCATTGTAGCATATGTGAACATAGGGTGTTATTACATCATAGGTATCCCTGTAGGAGTTGTGCTTGGTAATGTTTTCCATTTGCAAGTCAAGGGTATATGGATCGGAATGTTGTTTGGAACATTTATTCAAACTTTGATGCTAATTATAATCACCTACAAAACTAATTGGGATGAGCAGGTAACTATAGCTCGTAATCGTATTAATAAGTGGTCGAAAGTGGACCCTGATCATGAAACAATTACCTCAGATAATTAG 1464 0.3928 MEGELKQKLLKSALEEEEEELTLVKRVWNESKVMWVVAAPGIFSRFSTFGLNVISQAFIGHIGSRELAGFALVFTVLVRFANGILLGMASALSTLCGQAYGAKEYGMMGVYLQKSWIVLFLTATCLLPLFIFTSPILMLLGQDESIAQMAGIISSWSIPILFAFIVSFTCQMFLQSQSKNTIIAFLAGFSIIIHLFLSWLLTIKFKFEIAGAMTSMSLAFWIPNIGQLIFITCGWCSDTWKGFSFLAFKDLWPVVKLSLSSGVMLCLELWYNTILVLLTGNMKNAEVQIDALSICLNINGWEMMISLGFMAAVSVRVANELGKGSSKAAKFSIVVTVLTSFAIGFVLFLFFLFFRERLAYIFTSNKDVANAVGDLSPLLAISILLNSVQPVLSGVAIGAGWQSIVAYVNIGCYYIIGIPVGVVLGNVFHLQVKGIWIGMLFGTFIQTLMLIIITYKTNWDEQVTIARNRINKWSKVDPDHETITSDN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00561 487 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g00561 487 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g00561 487 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 474 - -
Cca07g00561 487 CDD MATE_eukaryotic 30 463 IPR045069 GO:0042910|GO:1990961
Cca07g00561 487 PANTHER PROTEIN DETOXIFICATION 12 474 - -
Cca07g00561 487 TIGRFAM matE: MATE efflux family protein 42 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00561 Cca-Chr7 8000835 8007030 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00561 K03327 - gmx:100789487 828.55