Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02114 ATGGGAGAAGAGATAAAGAAGAACCTTCTGCAACATCAAAACACATCAGAGGAGGAGGAAGAGCCATTAAGCAAAAGAGTATGGCAAGAAAGCAAGAAGATGTGGGTAGTAGCAGGTCCTGCCATATTCAATAGATTTTCAACATTTGGAATATCTGTAGTTAGCCAATCCTTCATTGGACACATTGGACCCACTGAACTAGCTGCTTATGCCATTGTTATGATTGTCCTAGTCAGATTTGCAAATGGTATTTTGTTGGGTATGGCGAGTGCATTGGAAACTCTATGTGGACAAGCATATGGAGCAAAACAATATGATATGCTTGGAGTTTATCTTCAAAGGTCATGGATAGTTATGTTCATGGCCTCAATTCTTCTTCTTCCAATTTACATTTTCACAGTTCCAATATTAGAGGCACTCGGCCAAAATAAAAACATTGCAATAATGGCTGGAAGCATTTCTTTATGGTCAATCGGTATCGTATTTGCTTTCAGCGTCTCATTCACTTGTCAAATGTTTCTACAAGCACAAAGCAAGAACAAGATTATCGCTTACCTTGCAGCATTTTCGATTACTATTCATGTTTTCATGTCATGGCTTTTAACTCTTAAGTTCAAGTTCGGACTTAATGGTGTAATGACATCAATTCTTTTGGCCTATTGGATACCGAATTTTGGACAACTTTTTTATATCATGAAAAAATGTCCTGATACATGGAAAGGTTTCTCATTTTTGGCTTTCAAAGATCTTTGGGCTGTTACCAAACTTTCTTTGTCTTCTGGAGCTATGTTATGTCTTGAAATATGGTACACCACAGTTTTGATTCTTCTAACAGGAAATACGAAAAATGCTGAGATTGCTATTGATGCTTTGTCCATATGCATGAACATCAATGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCAGCTAGTGTTAGGGTGTCAAATGAACTTGGAAGAGGAAGTTCAAAGGCAGCAAAGTTTTCCATTGTGATAACAGTGCTCACATCATTTTCCATTGGATTTGTACTATTCGTGATCTTTCTATTCTTAAAGGAAAAACTTGCTTACATTTTCACACCAAATCCTGATGTAGCTAAAGCAGTTGGAGATCTATCACCTTTGCTCTCATTCTCCATATTGATGAATAGTGTCCAACCTGTCCTGTCTGGAGTTTCTGTTGGAGCTGGATGGCAAAAAGTTGTAGCATATGTTAACATAGGCAGCTATTACCTTATTGGTGTTCCTTTTGGACTGCTACTTGGACACTATCTTCATTTGCAAGTTAAGGGTGTTTGGATTGGAATGTTGTTTGGAATTTTTGTTCAAACAGTAATACTTATCACAATCACATATAAAACTGATTGGGACAATCAGGTTGTGGTTGCTCGAAATCGTGTTAACAAATGGGCTATTGTGGAGAAGGACGAATCAACTGAAACATCAAGCTTTAGATAA 1464 0.375 MGEEIKKNLLQHQNTSEEEEEPLSKRVWQESKKMWVVAGPAIFNRFSTFGISVVSQSFIGHIGPTELAAYAIVMIVLVRFANGILLGMASALETLCGQAYGAKQYDMLGVYLQRSWIVMFMASILLLPIYIFTVPILEALGQNKNIAIMAGSISLWSIGIVFAFSVSFTCQMFLQAQSKNKIIAYLAAFSITIHVFMSWLLTLKFKFGLNGVMTSILLAYWIPNFGQLFYIMKKCPDTWKGFSFLAFKDLWAVTKLSLSSGAMLCLEIWYTTVLILLTGNTKNAEIAIDALSICMNINGWEMMISLGFMAAASVRVSNELGRGSSKAAKFSIVITVLTSFSIGFVLFVIFLFLKEKLAYIFTPNPDVAKAVGDLSPLLSFSILMNSVQPVLSGVSVGAGWQKVVAYVNIGSYYLIGVPFGLLLGHYLHLQVKGVWIGMLFGIFVQTVILITITYKTDWDNQVVVARNRVNKWAIVEKDESTETSSFR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02114 487 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g02114 487 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa5g02114 487 Pfam MatE 262 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa5g02114 487 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 458 - -
Vifa5g02114 487 NCBIfam MATE family efflux transporter 40 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa5g02114 487 CDD MATE_eukaryotic 30 462 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02114 Vifa-Chr5 700280068 700282331 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02114 K03327 - gmx:100775619 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02114 5 700280068 700282331 Vifa5g02114 5 700280068 700282331 ECH