Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1078 TCGGATAGAGAGTTCCTTTATCAAATATTTGGAGAGGTTATCGAAGCTGGGGCAACAACTGTGGGCATAGGAGACACTGTGGGCATTACAATGCCATTCGAGTTTGGAAAACTGATTGCTGATATAAAAGCCAATACCCCTGGAATTGAAAAGGCTATTATCTCGGTTCACTGTCATAATGATCTTGGACATGCTACTGCAAACACAATGAGTTTTAATTACTTTCAGGCTACACGTGCTGGTGCAAGGCAATTAGAAGTAACAGTTAATGGGATTGGTGAAAGGGCTGGTAATGCTGCATTTGAAGAGGTTGTGATGGCCCTAAGATGCAGGGGAGATCATGTTTTAGGTGGTTTGTATACTGGAATTAATACAAAGCACATCCTGAAGACCAGCAAGATGGTTGAAGAGTGCTCTGGTATGCATTTACAGCCACACAAAGCTATTGTAGGTCATAATGCATTTCTCCATGAAAGTGGAATTCATCAGGATGGATTGTTAAAGCATAGAGGCACATATGAAATACTTTCTCCTGAAGATATTGGTTATGAAAGGTCCAATGGAGCTAATATGGTCCTAGGGAAGCTAAGTGGACGTCAAGCTTTGAAAAAACGACTTAAAGAGCTTGGTTATGAACTCAAGGAGGATGAAGTTGAGAGTGTATTTCAAAACTTCAAAGCAATGGCTGAGAAAAAAAAGAGAGTTACCGATGTTGACCTTAAAGCATTGGTATCAGATAAAGTTTGTGATGTAGAACCTATTTGGAAGCTTGGTGGGTTGGAGGTGACTTGTGGAACTATGAATTTTTCATCAACAACTATTGAACTTGTTAGAATTGACGGTACCACACACGTTGCTTGTGCCGTTGGAAAAGGACCAGTGGATTCAGCTTTTAAGGCTGTCAATCTCATTGTCAAGGAAGCTGTGAGAGTACTTGAGTACTCTCTAAATACAATCACAGGAGGCACTGATGCAATTGCAACTATACATGTTGTAATTCGTAAAGAGAATGCGCACTCATCTGCTTCTACTGGAAACATTATTTATCCAACATTTAGTGGGATTGGAGACGGAGTAGATGTTGTTGTTTCCAGTGTAGAGGCTTATCTTGGTGCACTAAACAAAATGCTCGATTTCAACGAATGA 1146 0.4031 SDREFLYQIFGEVIEAGATTVGIGDTVGITMPFEFGKLIADIKANTPGIEKAIISVHCHNDLGHATANTMSFNYFQATRAGARQLEVTVNGIGERAGNAAFEEVVMALRCRGDHVLGGLYTGINTKHILKTSKMVEECSGMHLQPHKAIVGHNAFLHESGIHQDGLLKHRGTYEILSPEDIGYERSNGANMVLGKLSGRQALKKRLKELGYELKEDEVESVFQNFKAMAEKKKRVTDVDLKALVSDKVCDVEPIWKLGGLEVTCGTMNFSSTTIELVRIDGTTHVACAVGKGPVDSAFKAVNLIVKEAVRVLEYSLNTITGGTDAIATIHVVIRKENAHSSASTGNIIYPTFSGIGDGVDVVVSSVEAYLGALNKMLDFNE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1078 381 SMART LeuA_dimer_2 234 377 IPR013709 GO:0003852|GO:0009098
Pvu1g1078 381 SUPERFAMILY Aldolase 2 153 - -
Pvu1g1078 381 Gene3D - 143 258 - -
Pvu1g1078 381 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 277 376 IPR036230 -
Pvu1g1078 381 Coils Coil 199 219 - -
Pvu1g1078 381 Gene3D - 265 377 IPR036230 -
Pvu1g1078 381 PANTHER HOMOCITRATE SYNTHASE-RELATED 1 380 - -
Pvu1g1078 381 Gene3D Aldolase class I 1 141 IPR013785 -
Pvu1g1078 381 Pfam HMGL-like 2 135 IPR000891 GO:0003824
Pvu1g1078 381 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 54 67 IPR002034 GO:0019752|GO:0046912
Pvu1g1078 381 Pfam LeuA allosteric (dimerisation) domain 235 377 IPR013709 GO:0003852|GO:0009098
Pvu1g1078 381 PANTHER 2-ISOPROPYLMALATE SYNTHASE 1, CHLOROPLASTIC 1 380 - -
Pvu1g1078 381 ProSiteProfiles Pyruvate carboxyltransferase domain. 1 129 IPR000891 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1078 Pvu-Chr1 25706950 25709913 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1078 K01649 - gmx:100816439 571.237