Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1978 ATGGAAGGAGATCTAAAGCAAAAGCTACTGAGAAAACCAGAAGAAAATGAAGAAGAAGAGACACTTGGTAAAAGGGTATGGAATGAAACAAAGCTTATGTGGATAGTTGCAGCACCAGCTATATTCACGAGATTCTCAACTTTTGGTATTCAAGTTATTAGTCAAGCTTTTGTTGGACATATTGGTTCTAAAGAACTCGCTGCTTTTGCTCTTGTTTTCACTGTTCTCATTAGGTTCGCCAATGGTATTCTGTTGGGAATGGCGAGTGCGTTGGCGACCCTTTGTGGACAAGCATATGGAGCAAAAGAATATGGAATGATGGGAGTGTATCTTCAAAGATCATGGCTAGTTTTATTCTTAACTGCAATCATTCTTCTTCCTGTGTTCTTCCTCACATCTCCAATTTTGATCCTCTTGGGCCAAGACGAAAGCATAGCACAAGTTGCAGGAACCATTTCGCTATGGTCGATTCCTGTTATGTTTGCTTTCATTGTCTCCTTCACTTGTCAAACATTCCTTCAATCACAAAGCAAGAACACCATCATTGCATTCTTGGCTGCTTTTTCCATCATCATCCACGCTTTCCTCTCTTGGCTTTTGACAATGAAATACAAATTCGGGATCGCCGGTGCGATGATTTCAACTAGTTTGGCGTATTGGATTCCCAACATTGGTCAGCTTATATTTGTTACATGTGGTTGGTGTTCTGAAACTTGGAAAGGTTTCTCTTTTTTGGCATTCCAAGACCTTTGGCCTGTTGTCAAACTTTCCCTTTCAGCTGGTGCCATGTTGTGTCTTGAACTCTGGTACAACACGATATTGGTTCTTTTGACAGGAAACATGAAAAACGCAGAGGTTCAAATCGACGCGCTATCTATATGTCTCAACATCAATGGATGGGAAATGATGATATCGCTCGGTTTCATGGCTGCTGCAAGCGTTCGAGTATCTAATGAGCTTGGTAAAGGAAGCGCGAAAGCCGCGAAATTCTCTATCGTTGTGACAGTGCTTACGTCGTTGGCCATCGGATCCTGTCTGTTTTTGTTTTTCTTGTTTTTCAGGGAAAGACTTGCTTATATATTTACCTCAAACAAAGAGGTGGCTGCAGCAGTCGGAGAATTATCGCCTTTGTTATCGATCTCTATACTGCTAAACAGTGTTCAACCGGTACTGTCAGGAGTAGCTATTGGAGCAGGGTGGCAAAGCATTGTAGCATATGTGAACATAGGATGTTATTACATCATAGGTATTCCTGTTGGAATTGTCCTTGGTAATGTCATTCATTGGCAAGTCAAGGGAATTTGGATGGGAATGTTGTTCGGAACATTGATTCAAACTATAGTGCTAGTTATAATCACCTATAAAACAAACTGGGACGAGCAGGTGATTGTAGCTCGGAATCGTGTAAAGAGGTGGTCCAAGGTAGAGAGTACTACTGATCAAGGAGAAGAAAGAAAGTTAATTGTTAAATAG 1473 0.4114 MEGDLKQKLLRKPEENEEEETLGKRVWNETKLMWIVAAPAIFTRFSTFGIQVISQAFVGHIGSKELAAFALVFTVLIRFANGILLGMASALATLCGQAYGAKEYGMMGVYLQRSWLVLFLTAIILLPVFFLTSPILILLGQDESIAQVAGTISLWSIPVMFAFIVSFTCQTFLQSQSKNTIIAFLAAFSIIIHAFLSWLLTMKYKFGIAGAMISTSLAYWIPNIGQLIFVTCGWCSETWKGFSFLAFQDLWPVVKLSLSAGAMLCLELWYNTILVLLTGNMKNAEVQIDALSICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSCLFLFFLFFRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSIVAYVNIGCYYIIGIPVGIVLGNVIHWQVKGIWMGMLFGTLIQTIVLVIITYKTNWDEQVIVARNRVKRWSKVESTTDQGEERKLIVK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1978 490 TIGRFAM matE: MATE efflux family protein 39 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa3g1978 490 Pfam MatE 39 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa3g1978 490 Pfam MatE 262 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa3g1978 490 CDD MATE_eukaryotic 29 462 IPR045069 GO:0042910|GO:1990961
Psa3g1978 490 PANTHER PROTEIN DETOXIFICATION 12 474 - -
Psa3g1978 490 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1978 Psa-Chr3 175760519 175764507 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1978 K03327 - gmx:100792122 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1978 3 175760519 175764507 Psa3g1978 3 175760519 175764507 ECH