Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1260 ATGGCAAAAGATCTAAAACAAAATCTACTAATAAAAAATTCACCATCATCACCATCATCATCAGAAGAAGGTGAAGAGTCACTTGGTAAAAGGGTGTGGAATGAAACAAAACTTATGTGGGTAGTTGCAGCACCAGCTATTTTTACAAGATTTTCAACTTTTGGTATTCAAGTTATTAGTCAAGCTTTTGTTGGTCATATTGGTTCTAAAGAACTTGCTGCTTTTGCTCTTGTTTTCACTGTTCTTATTAGATTTGCTAATGGTATTCTTTTGGGAATGGCGAGTGCCTTGGCGACCCTTTGTGGACAAGCATATGGTGCAAAAGAACATGGAATGATGGGAGTGTATCTTCAAAGATCATGGATAGTGTTATTCTTAACAGCACTAATTCTTCTTCCTGTATTTTTTTTCACAACTCCACTTTTAAATCTGTTAGGCCAAGATGAAAGCATAGCAGAAGTTGCAGGAACCATTTCTCTTTGGTCAATTCCTGTTATGTTTGCTTTCATTGTCTCATTCACTTGCCAAACATTCCTTCAATCACAAAGCAAAAACACCATCATTGCATTTTTAGCAGCTTTTTCCATTATCATTCATGGATTCCTCTCCTGGCTTTTGACAATGAAATACAAATTTGGGATTGCTGGTGCAATGATTTCAACAAGTTTGGCTTATTGGATTCCCAACATTGGTCAACTTATATTTGTTACATGTGGTTGGTGCCCTGAAACTTGGAAAGGTTTCTCATTTTTAGCATTCCAAGACCTTTGGCCTGTTGTCAAACTTTCCCTTTCAGCTGGTGCCATGTTGTGTCTTGAGCTATGGTACAATTCAATATTGGTTCTTTTGACAGGAAACATGAAAAATGCAGAGGTTGAAATTGATGCACTATCCATCTGTCTCAACATCAATGGATGGGAAATGATGATATCACTAGGTTTCATGGCTGCAGCAAGTGTTCGAGTATCAAACGAGCTTGGTAAAGGAAGCGCCAAAGCCGCAAAGTTCTCGATCGTTGTCACAGTGCTTACATCGTTGGCCATCGGATCCTTTCTGTTTGTGTTTTTCTTAATTTTTAGGGAAAGACTTGCTTATATATTTACCGATAATAAAGAGGTGGCCGCAGCTGTCGGAGATTTAGCACCTTTGTTATCGATCTCTATACTGTTAAACAGTGTTCAACCAGTTCTCTCAGGAGTGGCTATTGGAGCTGGCTGGCAAAGCATTGTTGCATATGTCAACATATGTTGTTATTACATCATAGGTATTCCAGTTGGGATTGTTCTTGGTAATGTTATCCATTGGCAAGTCAAGGGAATATGGATGGGAATGTTGTTTGGAACATTGATTCAAACTATAGTGCTAATTATAATCACCTACAAAACTAATTGGGATGAGCAGGTGGTTGTAGCTCGTAATCGTATAAACAGGTGGTCCAAAGTGGAGAGTACTGATCAAGAAACAGAAAGAAAATTAATTGGAAAGTAG 1488 0.3817 MAKDLKQNLLIKNSPSSPSSSEEGEESLGKRVWNETKLMWVVAAPAIFTRFSTFGIQVISQAFVGHIGSKELAAFALVFTVLIRFANGILLGMASALATLCGQAYGAKEHGMMGVYLQRSWIVLFLTALILLPVFFFTTPLLNLLGQDESIAEVAGTISLWSIPVMFAFIVSFTCQTFLQSQSKNTIIAFLAAFSIIIHGFLSWLLTMKYKFGIAGAMISTSLAYWIPNIGQLIFVTCGWCPETWKGFSFLAFQDLWPVVKLSLSAGAMLCLELWYNSILVLLTGNMKNAEVEIDALSICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFVFFLIFRERLAYIFTDNKEVAAAVGDLAPLLSISILLNSVQPVLSGVAIGAGWQSIVAYVNICCYYIIGIPVGIVLGNVIHWQVKGIWMGMLFGTLIQTIVLIIITYKTNWDEQVVVARNRINRWSKVESTDQETERKLIGK* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1260 495 CDD MATE_eukaryotic 35 468 IPR045069 GO:0042910|GO:1990961
Tpr6g1260 495 TIGRFAM matE: MATE efflux family protein 45 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr6g1260 495 MobiDBLite consensus disorder prediction 9 23 - -
Tpr6g1260 495 PANTHER MULTIDRUG RESISTANCE PROTEIN 17 480 - -
Tpr6g1260 495 MobiDBLite consensus disorder prediction 1 26 - -
Tpr6g1260 495 Pfam MatE 268 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr6g1260 495 Pfam MatE 45 205 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr6g1260 495 PANTHER PROTEIN DETOXIFICATION 17 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1260 Tpr-Chr6 13007597 13011959 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1260 K03327 - gmx:100792122 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1260 6 13007597 13011959 Tpr6g1260 6 13007597 13011959 ECH