Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1979 ATGGAAGAAGAGATCAAGAAGAGCCTCTTGCAGCACCAAAACACATCAGAAGAGGAGGAAGAGCCATTGAGGAAAAGAGTATGGCAAGAAAGCAAGAAGATGTGGAAAGTAGCAGGTCCTGCCATATTCAATAGATTTTCAACATTTGGAATCACTGTAGTTAGCCAATCCTTCATTGGTCACATTGGCCCTACTGAACTAGCTGCCTATGCCATTGTTATGACTGTCCTAGTCAGATTTGCTAATGGTGTTTTGTTGGGTATGGCGAGTGCCTTGGAAACTCTCTGTGGACAAGCATATGGAGCAAAGCAATACGATATGCTTGGAGTTTATCTTCAAAGATCATGGATAGTTATATTCACAGCCTCACTTTTTCTTCTTCCAATTTACATTTTCACAATTCCAATATTAGAGGCACTTGGCCAAGATAAAAACATTGCAATAGTTGCTGGAAGCATTTCCTTATGGTCTATCGGTATCGTATTTGCTTTCAGCGTCTCATTCACTTGTCAAATGTTTCTACAAGCACAAAGCAAGAACAAGATTATTGCTTACCTTGCAGCAGTTTCGATTTCACTTCATGTTTTTCTGTCATGGCTTTTAACTGTTAAGTTCAAGTTCGGACTTAATGGCGCAATGACATCGATCCTTTTGGCTTATTGGATACCGAATTTAGGCCAACTTATTTATATCCTCAAAAAGTGTCCTGATACATGGAAGGGTTTCTCATTTTTGGCTTTCAAAGATCTTTGGTCTGTTACCAAACTTTCTTTGTCTTCTGGAGCTATGGTATGTCTTGAAGTATGGTACACCACAATTTTGATTCTTCTAACAGGAAACATGAAAAATGCTGAGATTGCTATTGATGCTTTGTCGATATGCATGAACATCAATGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCAGCTAGTGTTAGGGTTTCAAATGAACTCGGAAGAGGAAGTTCAAAGGGAGCAAAATTTTCTATTCTGATAACAGTGCTCACATCATTTGCATTTGGATTTGTACTATTCTTGATCTTTCTATTCCTAAGGGAAAGACTTGCTTACATTTTCACACCAAATCCAGATGTGGCTGATGCAGTTGGAGATTTATCACCTTTGCTCTCATTCTCCATACTGTTGAATAGTATACAACCTGTCCTCTCTGGAGTTTCTGTTGGAGCTGGGTGGCAAAAAGTTGTAGCATATGTAAACATAGGTAGCTATTACCTTATTGGTATTCCTTTTGGACTAGTACTTGGTAATCTTCTCCATTTGCAAGTTAAGGGTGTTTGGATTGGAATGTTGTTTGGAATTTTCGTTCAAACACTAGTACTTATCACAATCACATGTAAAACTGATTGGGACAATCAGGTTGTGATTGCTCGAAATCGTGTTAACAAATGGACTATAGTGGAGAAGGACGAATCTGTCAACGCGTCAAGTTTGTCTATATAA 1467 0.3865 MEEEIKKSLLQHQNTSEEEEEPLRKRVWQESKKMWKVAGPAIFNRFSTFGITVVSQSFIGHIGPTELAAYAIVMTVLVRFANGVLLGMASALETLCGQAYGAKQYDMLGVYLQRSWIVIFTASLFLLPIYIFTIPILEALGQDKNIAIVAGSISLWSIGIVFAFSVSFTCQMFLQAQSKNKIIAYLAAVSISLHVFLSWLLTVKFKFGLNGAMTSILLAYWIPNLGQLIYILKKCPDTWKGFSFLAFKDLWSVTKLSLSSGAMVCLEVWYTTILILLTGNMKNAEIAIDALSICMNINGWEMMISLGFMAAASVRVSNELGRGSSKGAKFSILITVLTSFAFGFVLFLIFLFLRERLAYIFTPNPDVADAVGDLSPLLSFSILLNSIQPVLSGVSVGAGWQKVVAYVNIGSYYLIGIPFGLVLGNLLHLQVKGVWIGMLFGIFVQTLVLITITCKTDWDNQVVIARNRVNKWTIVEKDESVNASSLSI* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1979 488 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa3g1979 488 Pfam MatE 262 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa3g1979 488 MobiDBLite consensus disorder prediction 1 22 - -
Psa3g1979 488 PANTHER PROTEIN DETOXIFICATION 12 474 - -
Psa3g1979 488 TIGRFAM matE: MATE efflux family protein 40 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Psa3g1979 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 474 - -
Psa3g1979 488 CDD MATE_eukaryotic 30 462 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1979 Psa-Chr3 175838052 175840922 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1979 K03327 - gmx:100775619 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1979 3 175838052 175840922 Psa3g1979 3 175838052 175840922 ECH