Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02113 ATGGAAGAAGAGATAAAGAAGAACCTTTTGCAGCATCAAAACACATCAGAAGAGGAGGAAGAGCCATTAAGCAAAAGAGTATGGCAAGAAAGCAAGAAGATGTGGGTAGTAGCAGGTCCTGCCATATTCAATAGATTTTCAACATTTGGAATCACTGTAGTTAGTCAATCCTTCATTGGTTACATAGGTTCCACTGAATTAGCTGCTTATTCTCTTGTTATGACTGTTCTAATCAGATTTGCAAATGGTGTTTTGTTGGGTATGGCAAGTGCATTGGAAACTCTATGTGGACAAGCATATGGTGCAAGACAATATGATATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTTTTATTCTTGACCACAATTCTTCTTCTTCCTATTTACATATTCACCACTCCAATTTTAGAGGCACTTGGTCAAGATAAAAACATTGCAGAAGTTGCTGGAAGCATTTCTTTATGGTCAATAGGTATCATATTTGCTTTCTCTGTGTCATTCACTTGCCAAATGTTTCTACAAGCACAAAGCAAGAACGAGATTATTGCTTACCTTGCGGCCGTTTCGATTTCAATTCATGTTTTTATGTCATGGCTTTTAACTGTTAAGTTCAAATTTGGACTTAATGGTGCAATGACATCAATCATTTTGGCACATTGGATACCTAATTTGGGTCAGCTTGTTTTTATCATGAGAAAGTGTCCTGATACATGGAAGGGTTTCTCATTTTTGGCCTTCAAAGATCTTTGGCCTGTTATCAAGCTTTCTTTGTCTTCTGGAGTTATGTTATGTCTTGAAATATGGTACAACACAGTTTTGATTCTTCTAACAGGGAACATGGAAAATGCTGAGATTTCCATTGATGCTTTGGCCATATGCCTCAACATCACTGGGTGGGAAATGATGATAGCTCTTGGCTTCTTTGCTGCAGCTAGTGTTAGGGTGTCTAATGAACTTGGAAGAGGAAGTTCAAAGGCAGCAAAGTTTTCCATTGTGATAACAGTGCTCACATCATTTTCCATTGGATTTGTACTATTCGTGATCTTTCTATTCTTAAAGGAAAAACTTGCTTACATTTTCACACCAAATCCTGATGTAGCTAAAGCAGTTGGAGATCTATCACCTTTGCTCTCATTCTCCATATTGATGAATAGTGTCCAACCTGTCCTGTCTGGAGTTTCTGTTGGAGCTGGATGGCAAAAAGTTGTAGCATATGTTAACATAGGCAGCTATTACCTTATTGGTATTCCTATTGGATTGCTACTTGGTAATATTCTTCATTTGCAAGTTAAGGGTGTTTGGATTGGAATGTTGTTTGGAATTCTTGTTCAAACAATAATACTTATCACAATCACATATAAAACTGATTGGGACAACCAGGTTAGGATTGCTCGAAATCGTGTTAACAAATGGGCTGTTGTAGAGAATGTTGAATCAAACCACACATCAAATATATCTAGCTGA 1467 0.3736 MEEEIKKNLLQHQNTSEEEEEPLSKRVWQESKKMWVVAGPAIFNRFSTFGITVVSQSFIGYIGSTELAAYSLVMTVLIRFANGVLLGMASALETLCGQAYGARQYDMLGVYLQRSWIVLFLTTILLLPIYIFTTPILEALGQDKNIAEVAGSISLWSIGIIFAFSVSFTCQMFLQAQSKNEIIAYLAAVSISIHVFMSWLLTVKFKFGLNGAMTSIILAHWIPNLGQLVFIMRKCPDTWKGFSFLAFKDLWPVIKLSLSSGVMLCLEIWYNTVLILLTGNMENAEISIDALAICLNITGWEMMIALGFFAAASVRVSNELGRGSSKAAKFSIVITVLTSFSIGFVLFVIFLFLKEKLAYIFTPNPDVAKAVGDLSPLLSFSILMNSVQPVLSGVSVGAGWQKVVAYVNIGSYYLIGIPIGLLLGNILHLQVKGVWIGMLFGILVQTIILITITYKTDWDNQVRIARNRVNKWAVVENVESNHTSNISS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02113 488 CDD MATE_eukaryotic 30 463 IPR045069 GO:0042910|GO:1990961
Vifa5g02113 488 NCBIfam MATE family efflux transporter 40 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa5g02113 488 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g02113 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 458 - -
Vifa5g02113 488 Pfam MatE 262 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa5g02113 488 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02113 Vifa-Chr5 700140482 700149056 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02113 K03327 - gmx:100775619 778.089