Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1687 ATGGGAGAAGAGCTAAAGGAGAAGCTTTTGCATCAGCCAAACAATTCTTTAGGCAGTGCTGAAGAGGAAGAGTCACTGGGGAAAAGGGTATGGGAAGAAAGCAAGAAGATGTGGGTGGTAGCCGGCCCTGCCATATTCACAAGGTTTTCAACGTTTGGAATCACTGTGGTTAGTCAATCCTTCATTGGGCATATTGGCTCAACTGAACTAGCAGCCTATGCCCTTGTTATCACTGTCCTAGTAAGGTTTGCAAATGGTGTATTGATTGGTATGGCAAGTGCATTGGAAACTCTTTGTGGGCAAGCATATGGGGCCAAAAAATATGACATGCTTGGAGTGTATCTTCAAAGATCCTGGATAGTGTTGTTCATGACCACAATACTTCTTCTTCCTATTTACATCTTTACCACTCCCTTGTTAGAGGCTCTAGGCCAAGAAAAAAGTATTGCTCAAGTTGCTGGAAGCATCTCTCTCTGGGCAATAGGCgtgatattttctttctctgtgTCATTCACCTGCCAAATGTTCCTACAAGCACAGAGCAAGAACAAGATTATTGCCTACCTTGCAGCagtttcaatttcaattcaCGTTTTTCTGTCATGGCTTTTAACTGTTAAGTTCAAGTTTGGTCTCAACGGTGCAATGATATCAACACTTTTGGCATATTGGATTCCAAACTTGGGCCAGCTTGTGTTTATCATGACTAAGTGCCCTGACACATGGAAGGGTTTCTCATTCTTGGCCTTCAAAGATCTTTGTCCTGTTATCAAGCTTTCAGTCTCTTCTGGAGCTATGCTATGTCTTGAGATTTGGTACAACACCGTTTTGATTCTTCTAACAGGCAACACGAAAAATGCTGAAGTTTCCATTGATGCTCTGGCCATATGCCTCAACATCAATGGCTGGGAAATGATGGTAGCCCTTGGTTTCTTTGCTGCAGCTGGTGTCCGGGTGGCAAATGAGCTTGGGAGAGGGAGTTCAAAGGCTGCAAAATTTTCCATTCTGATAACAGTTCTCACGTCATTTTCCATTGGGTTCGTGCTATTCTTGGTGTTCCTATTTTTGAGGGAAAAACTTGCGTACATTTTCACTACAGACCCAGAAGTGGCTAAAGCCGTTGGCGATTTATCACCTTTGCTGTCATTTTCCATCTTGTTGAACAGTGTTCAACCCGTGCTCTCCgGAGTTTCTGTGGGAGCTGGATGGCAAAGCGTTGTAGCGTATGTAAACATAGGCTGTTATTACTTGATTGGTATTCCTGTTGGAGTGCTGCTTGATAAGCTTCTCCATTTGCAAGTCAAGGGTATTTGGATTGGAATGTTGTTTGGAACATTTGTTCAAACCGTGATGCTTATTACAATCACATTTAAAACTGATTGGGACAAGCAGGTAGAGATAGCTCGAAATCGTGTTAACAAATGGGCAGTGGTGGAGAACGAAGAATCAAGCAGTAGATCGAGCATATCTAGCTAA 1476 0.4201 MGEELKEKLLHQPNNSLGSAEEEESLGKRVWEESKKMWVVAGPAIFTRFSTFGITVVSQSFIGHIGSTELAAYALVITVLVRFANGVLIGMASALETLCGQAYGAKKYDMLGVYLQRSWIVLFMTTILLLPIYIFTTPLLEALGQEKSIAQVAGSISLWAIGVIFSFSVSFTCQMFLQAQSKNKIIAYLAAVSISIHVFLSWLLTVKFKFGLNGAMISTLLAYWIPNLGQLVFIMTKCPDTWKGFSFLAFKDLCPVIKLSVSSGAMLCLEIWYNTVLILLTGNTKNAEVSIDALAICLNINGWEMMVALGFFAAAGVRVANELGRGSSKAAKFSILITVLTSFSIGFVLFLVFLFLREKLAYIFTTDPEVAKAVGDLSPLLSFSILLNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPVGVLLDKLLHLQVKGIWIGMLFGTFVQTVMLITITFKTDWDKQVEIARNRVNKWAVVENEESSSRSSISS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1687 491 PANTHER MULTIDRUG RESISTANCE PROTEIN 17 477 - -
Ssu4g1687 491 CDD MATE_eukaryotic 33 466 IPR045069 GO:0042910|GO:1990961
Ssu4g1687 491 PANTHER PROTEIN DETOXIFICATION 17 477 - -
Ssu4g1687 491 Pfam MatE 43 203 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu4g1687 491 Pfam MatE 265 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu4g1687 491 TIGRFAM matE: MATE efflux family protein 43 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1687 Ssu-Chr4 29682680 29687055 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1687 K03327 - gmx:100775619 842.802