Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1061 . . Adu06g01907 . . Ahy16g2041 Ahy6g1752 . . . . . . . . . Car03g01950 . . Dod01g2087 . . Gma19g00681 . Gso19g0636 . . Lal25g0771 . . . . . . . . . . . Mal3g3274 . . . . . Phco2g01320 . . . . . . . . . . . Tsu07g03119 . . Vimu6g03300 . . .
Pvu1g1062 . . Adu06g01908 . . Ahy16g2042 Ahy6g1754 . . . . . . . . . . . . Dod01g2086 . . Gma19g01169 . Gso19g1023 . . . . Lan10g0794 . . Lapu1g00337 Lasa3g02511 . . . . Lja1g1490 . . . . . . Phco2g01319 . . . . . . . . . Tpr6g1277 . . . . Vimu6g03301 . . .
Pvu1g1063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr7g2241 . . . . . . . . . . . . Trre13g02860 . . . . . . .
Pvu1g1064 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1065 . . Adu06g01909 . . Ahy16g2047 Ahy6g1755 . . . . . . . . . . . . Dod01g2084 . . . . . . . Lal25g0773 . . Lan6g1632 . . . . . . . . . Mepo3g02638 Mesa25g01505 . Mtr7g2446 . Phco2g01318 . . Pste5g01773 . . . . . . . Trre13g02988 . . . Vimu6g03302 . . .
Pvu1g1066 . . Adu06g01910 . . Ahy16g2048 Ahy6g1756 . . . . . . . . . . . . Dod01g2083 . . Gma19g00663 . Gso19g0619 . . Lal25g0777 . . Lan6g1631 . . . . . . . . . . . . . . . . . . . . . . . Sto8g1763 . . . . . Vimu6g03303 . . .
Pvu1g1067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1068 . . . . . . . . . . . . . Bach8g01416 . Bva04g01876 . Cca07g00555 . . . . . . Gso19g1018 Gso16g0432 . . . . . . . Lasa3g02491 . . . . . . . . . . . . . . . Pumo5g02414 Rops8g02593 Seca10g02231 Spst1g03588 Ssu4g1677 . . . Tsu07g03111 Vian2g01752 Vifa5g02117 . . . .
Pvu1g1069 . . Adu06g01941 . . Ahy16g2080 Ahy6g1786 . . . . . . . . . Car03g01944 . . . . . Gma19g01163 . . . . . . . . . Lapu1g00345 Lasa3g02490 . . . . Lja1g1497 Mal3g3267 Mepo3g02629 Mesa25g01514 . Mtr7g2436 Phac1g01426 . . Psa3g1970 . . . . Spst1g03590 Ssu4g1680 . Tpr6g1265 Trre13g02950 . . . Vimu6g03305 . . .
Pvu1g1070 . . Adu06g01943 . . Ahy16g2081 Ahy6g1787 . . . . . . . . . Car03g01943 Cca07g00557 . . . . Gma19g01162 . Gso19g1017 . . . . Lan10g0788 Lan6g1629 . Lapu1g00346 Lasa3g02489 . . . . Lja1g1498 Mal3g3266 Mepo3g02628 Mesa25g01515 . Mtr7g2435 Phac1g01428 . . Psa3g1971 . . . . Spst1g03591 Ssu4g1681 . Tpr6g1264 Trre13g02945 Tsu07g03110 . . Vimu6g03306 . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Bach Bach8g01416 Chr8 9762691 9767438 +
Bva Bva04g01876 Chr04 19239012 19245393 -
Gso Gso16g0432 Chr16 5020058 5035346 +
Pvu Pvu1g1061 Chr1 23561450 23566880 +
Adu Adu06g01907 Chr06 80402894 80409398 +
Ahy Ahy16g2041 Chr16 113381676 113387926 +
Ahy Ahy6g1752 Chr6 85167148 85173465 +
Car Car03g01950 Chr03 65534322 65539705 +
Dod Dod01g2087 Chr01 57299049 57305006 -
Gma Gma19g00681 Chr19 27648095 27654526 +
Gso Gso19g0636 Chr19 25402026 25408496 +
Lal Lal25g0771 Chr25 6614498 6621058 +
Mal Mal3g3274 Chr3 108866801 108873450 +
Phco Phco2g01320 Chr2 41588065 41593153 -
Tsu Tsu07g03119 Chr07 37157463 37163562 +
Vimu Vimu6g03300 Chr6 29522158 29530190 +
Pvu Pvu1g1062 Chr1 23566981 23568857 -
Adu Adu06g01908 Chr06 80443419 80446272 -
Ahy Ahy16g2042 Chr16 113402245 113404873 -
Ahy Ahy6g1754 Chr6 85210022 85212729 -
Dod Dod01g2086 Chr01 57296417 57298574 +
Gma Gma19g01169 Chr19 40351072 40353116 -
Gso Gso19g1023 Chr19 37899703 37901644 -
Lan Lan10g0794 Chr10 10915353 10917272 -
Lapu Lapu1g00337 Chr1 12649430 12651500 +
Lasa Lasa3g02511 Chr3 562678555 562679674 -
Lja Lja1g1490 Chr1 16083919 16086016 +
Phco Phco2g01319 Chr2 41586124 41587446 +
Tpr Tpr6g1277 Chr6 13248974 13252310 -
Vimu Vimu6g03301 Chr6 29528007 29529758 -
Pvu Pvu1g1063 Chr1 23605940 23608203 -
Mtr Mtr7g2241 Chr7 38769706 38776285 -
Trre Trre13g02860 Chr13 27975472 27976979 -
Pvu Pvu1g1064 Chr1 23630842 23632284 +
Pvu Pvu1g1065 Chr1 23638860 23642308 +
Adu Adu06g01909 Chr06 80461002 80464993 +
Ahy Ahy16g2047 Chr16 113493215 113497040 +
Ahy Ahy6g1755 Chr6 85218558 85222386 +
Dod Dod01g2084 Chr01 57287681 57291736 -
Lal Lal25g0773 Chr25 6635093 6639753 +
Lan Lan6g1632 Chr6 25046785 25049826 -
Mepo Mepo3g02638 Chr3 36303969 36306809 +
Mesa Mesa25g01505 Chr25 18232283 18234097 -
Mtr Mtr7g2446 Chr7 40869794 40872641 +
Phco Phco2g01318 Chr2 41536586 41538696 -
Pste Pste5g01773 Chr5 11251493 11254856 +
Trre Trre13g02988 Chr13 30352120 30353723 +
Vimu Vimu6g03302 Chr6 29542124 29544047 +
Pvu Pvu1g1066 Chr1 23671381 23672973 -
Adu Adu06g01910 Chr06 80465791 80467687 -
Ahy Ahy16g2048 Chr16 113498029 113499895 -
Ahy Ahy6g1756 Chr6 85223335 85225202 -
Dod Dod01g2083 Chr01 57283428 57285420 +
Gma Gma19g00663 Chr19 24223908 24226687 +
Gso Gso19g0619 Chr19 22779929 22782664 +
Lal Lal25g0777 Chr25 6669969 6672440 -
Lan Lan6g1631 Chr6 25035696 25038122 +
Sto Sto8g1763 Chr8 11225396 11225839 -
Vimu Vimu6g03303 Chr6 29552661 29553570 -
Pvu Pvu1g1067 Chr1 23716323 23717333 +
Pvu Pvu1g1068 Chr1 23719971 23727086 +
Bach Bach8g01416 Chr8 9762691 9767438 +
Bva Bva04g01876 Chr04 19239012 19245393 -
Cca Cca07g00555 Chr07 7891734 7917025 +
Gso Gso19g1018 Chr19 37823883 37848361 -
Gso Gso16g0432 Chr16 5020058 5035346 +
Lasa Lasa3g02491 Chr3 561538766 561543814 -
Pumo Pumo5g02414 Chr5 67169953 67184399 -
Rops Rops8g02593 Chr8 59316837 59339112 -
Seca Seca10g02231 Chr10 25858691 25885918 -
Spst Spst1g03588 Chr1 45151387 45153718 +
Ssu Ssu4g1677 Chr4 29395253 29406625 +
Tsu Tsu07g03111 Chr07 37081247 37093009 -
Vian Vian2g01752 Chr2 35649811 35673972 -
Vifa Vifa5g02117 Chr5 701699788 701727859 -
Pvu Pvu1g1069 Chr1 23746269 23750419 +
Adu Adu06g01941 Chr06 82068550 82081318 +
Ahy Ahy16g2080 Chr16 115719569 115732485 +
Ahy Ahy6g1786 Chr6 87017771 87030748 +
Car Car03g01944 Chr03 65484502 65495408 -
Gma Gma19g01163 Chr19 40275374 40303830 -
Lapu Lapu1g00345 Chr1 12752400 12780212 +
Lasa Lasa3g02490 Chr3 561523575 561543814 -
Lja Lja1g1497 Chr1 16139486 16155553 +
Mal Mal3g3267 Chr3 108779088 108793091 -
Mepo Mepo3g02629 Chr3 36236163 36247077 -
Mesa Mesa25g01514 Chr25 18305855 18313314 +
Mtr Mtr7g2436 Chr7 40790087 40801437 -
Phac Phac1g01426 Chr1 16646582 16659075 +
Psa Psa3g1970 Chr3 175513551 175536512 +
Spst Spst1g03590 Chr1 45177932 45179849 +
Ssu Ssu4g1680 Chr4 29465207 29475493 +
Tpr Tpr6g1265 Chr6 13123677 13138921 -
Trre Trre13g02950 Chr13 29732351 29742107 -
Vimu Vimu6g03305 Chr6 29579344 29594944 +
Pvu Pvu1g1070 Chr1 23889133 23896153 +
Adu Adu06g01943 Chr06 82335434 82341325 +
Ahy Ahy16g2081 Chr16 115858815 115864702 +
Ahy Ahy6g1787 Chr6 87292415 87298325 +
Car Car03g01943 Chr03 65476480 65482549 -
Cca Cca07g00557 Chr07 7933731 7942687 +
Gma Gma19g01162 Chr19 40266174 40273516 -
Gso Gso19g1017 Chr19 37816608 37822930 -
Lan Lan10g0788 Chr10 10829324 10842187 -
Lan Lan6g1629 Chr6 24937333 24947265 -
Lapu Lapu1g00346 Chr1 12788403 12796198 +
Lasa Lasa3g02489 Chr3 561491636 561495528 -
Lja Lja1g1498 Chr1 16157471 16163871 +
Mal Mal3g3266 Chr3 108770363 108775615 -
Mepo Mepo3g02628 Chr3 36228038 36233209 -
Mesa Mesa25g01515 Chr25 18317609 18321951 +
Mtr Mtr7g2435 Chr7 40783208 40788245 -
Phac Phac1g01428 Chr1 16663253 16674551 +
Psa Psa3g1971 Chr3 175604931 175609874 +
Spst Spst1g03591 Chr1 45183639 45187651 +
Ssu Ssu4g1681 Chr4 29492077 29497474 +
Tpr Tpr6g1264 Chr6 13117864 13121965 -
Trre Trre13g02945 Chr13 29677489 29681396 -
Tsu Tsu07g03110 Chr07 37068657 37073103 -
Vimu Vimu6g03306 Chr6 29597204 29603308 +
Pste Pste5g01773 Chr5 11251493 11254856 +