Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01310 ATGAACGGCTCTCGCTCTCGTTCCCGCCCCGAGTATATCCCGGGCCACATTCCGGACCCTTCCTACGTCCGCATTTTGGACACCACCCTCCGCGACGGCGAGCAGGCTCCCGGCGCCGCCATGACGGCTGAGCAGAAGCTGCGGATCGCGCGGCAGCTGGCGAAGCTGGGCGTGGACATCATCGAGGCAGGGTTCCCTTCTGCATCACAGGAGGACTTCAATGGCGTGAAGATGATAGCGCAGGAAGTTGGGAGCAAGTGCGACGATGATGGGTACGTTTCGGTGATTGTTGCGATGTGCAGGTGCAATGAGAAGGACATTAGGACTGCATGGGAGGCTGTGAAGGATGCGAAGAGGCCGAGGCTTTTGCCCTTCATCGCCACCAGCCCCATTCACATGGAGTACAAGCTTCGAAAGACCAAAGAAGAGGTTCTTCAAATAGCTCGCAGCATGGTCGCTTTCGCTCGCAGTTTGGGTTGTCATGACATTGAGTTCGGTGCTGAGGATGCAGCCAGATCGGATAGAGAGTTCCTTTATAAAATATTTGGAGATGTTATCGAAGCTGGGGCAACAACTGTGGTGGTAGCAGACACTGTGGGCGTAACAATGCCATTCGAGTTTGGAAAACTGATTGCTGATATAAAGGCCAATACTCCTGGAATTGAAAAGGCTATTATTGTAGTTCACTGTCATAATGATCTTGGACATGCTACTGCAAACACAATAGAGGCTGCACGTGCTGGTGCAAGGCAACTAGAAGTAACAATTAATGGCATTGGTGAAAGGGCTGGTAATGCTGCATTAGAAGAGGTTGTGATGGCCCTAAGATGCAGGGGAGATCATGTTTTAGGTGGTTTATACACTGGAATTAATACAAAACACATCCTGAAGACTAGCAAGATGGTTGAAGAGTGCTCCGGTATGCATTTACAGCCACACAAAGCTATTGTAGGTCATAATGCATTTCTCCATGAAAGTGGCATTCATCAGGCTGGATTGTTAAAGCATAGAGGCACATATGAAATACTTTCTCCTGAAGATATTGGTTATGAAAGGTCCAATGAAGCTAATATGGTCTTAGGGAAGCTAAGTGGACGCCAAGCTTTGAAAAAACGACTTAAAGAGCTTGGTTATGAATTGAAGGAGGATGAAGTTGAGAGTGTATTTCAAAACTTTAAAGCAGTGGCTGAGAAAAAAAAGAGAGTTACTGATGTTGACCTTAAGACATTGGTATCAGATAAAGTTTATGATGTAGAACCTATTTGGAAGCTTGGTGGGTTGGAGGTGACTTGTGGGACTATGAATTTTTCATCAACAACTATCAAACTTATTACAATTGACGGTACCACACACGTTGCTTGTTGCGTTGGAAAAGGACCAGTGGATTCAGCTTTCAAGGCTGTCGATCTCATTGTCAAGGAAGCTGTGAAAGTACTTGAGTACTCACTAAATACAGTCACAAAAGGCACTGATGCAATTGCAACTATATATGTTGTAATTCGTAAAGAGAATACACACTCACCTACTTCTACTTTAAATGGGAACACTGTTTATCCAACATTTAGTGGGATTGGAAAAGGAGTAGATGTTGTTGTTTCCAGTGTAGAGGCTTATCTTATTGCACTAAACAAAATGGTCAATTTCAAGGAATGA 1653 0.4513 MNGSRSRSRPEYIPGHIPDPSYVRILDTTLRDGEQAPGAAMTAEQKLRIARQLAKLGVDIIEAGFPSASQEDFNGVKMIAQEVGSKCDDDGYVSVIVAMCRCNEKDIRTAWEAVKDAKRPRLLPFIATSPIHMEYKLRKTKEEVLQIARSMVAFARSLGCHDIEFGAEDAARSDREFLYKIFGDVIEAGATTVVVADTVGVTMPFEFGKLIADIKANTPGIEKAIIVVHCHNDLGHATANTIEAARAGARQLEVTINGIGERAGNAALEEVVMALRCRGDHVLGGLYTGINTKHILKTSKMVEECSGMHLQPHKAIVGHNAFLHESGIHQAGLLKHRGTYEILSPEDIGYERSNEANMVLGKLSGRQALKKRLKELGYELKEDEVESVFQNFKAVAEKKKRVTDVDLKTLVSDKVYDVEPIWKLGGLEVTCGTMNFSSTTIKLITIDGTTHVACCVGKGPVDSAFKAVDLIVKEAVKVLEYSLNTVTKGTDAIATIYVVIRKENTHSPTSTLNGNTVYPTFSGIGKGVDVVVSSVEAYLIALNKMVNFKE 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01310 550 ProSiteProfiles Pyruvate carboxyltransferase domain. 23 296 IPR000891 GO:0003824
Phco2g01310 550 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 443 545 IPR036230 -
Phco2g01310 550 SUPERFAMILY Aldolase 20 320 - -
Phco2g01310 550 Pfam LeuA allosteric (dimerisation) domain 402 545 IPR013709 GO:0003852|GO:0009098
Phco2g01310 550 FunFam 2-isopropylmalate synthase 19 308 - -
Phco2g01310 550 Pfam HMGL-like 23 302 IPR000891 GO:0003824
Phco2g01310 550 Gene3D - 310 425 - -
Phco2g01310 550 PANTHER HOMOCITRATE SYNTHASE-RELATED 11 548 - -
Phco2g01310 550 SMART LeuA_dimer_2 401 546 IPR013709 GO:0003852|GO:0009098
Phco2g01310 550 Coils Coil 366 386 - -
Phco2g01310 550 Gene3D - 432 546 IPR036230 -
Phco2g01310 550 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 1. 30 46 IPR002034 GO:0019752|GO:0046912
Phco2g01310 550 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 226 239 IPR002034 GO:0019752|GO:0046912
Phco2g01310 550 Gene3D Aldolase class I 20 308 IPR013785 -
Phco2g01310 550 CDD DRE_TIM_IPMS 25 304 - -
Phco2g01310 550 FunFam 2-isopropylmalate synthase 1 chloroplastic 309 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01310 Phco-Chr2 41258600 41266222 Tandem