Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00563 ATGGGAGAAGAGCTAAAGAAGAAGCTTTTGCATCAGCGGAACAATTCTTTGGTGAGTGATGTTGGAGAAGAAGAGTCACTAGGAAAAAGGGCATGGGAAGAAAGCAAGAAGATGTGGGTGGTAGCAGGTCCTGCCATATTCACAAGGTTTTCAACGTTTGGAATCACTGTGGTTACTCAATCCTTCATTGGTCATATTGGTTCAACTGAACTAGCTGCTTATGCTCTTGTCATCACTGTCTTAGTCAGGTTTGCAAATGGTGTATTGattgGTATGGCAAGTGCATTGGAAACTCTTTGTGGACAAGCATATGGGGCAAAAAGATATGACATGCTTGGAGTGTATCTTCAAAGATCTTGGATAGTGTTGTTCATGACCTCAATACTTCTTCTTCCTATTTACATCTTCACCACTCCATTGTTAGAGGCTCTAGGCCAAGAAAAAAGTATTGCTCAAGTAGCAGGAAGCATTTCTCTGTGGGCAATAGGAGTGATATTTTCTTTTTCTGTGTCATTCACCTGCCAAATGTTCCTACAAGCACAGAGTAAGAACAAGATTATAGCCTACCTTGCAGCAGTTTCAATTTCAATTCACGTTTTGCTGTCATGGCTTTTAACTGTTAAGTTCAAGTTTGGGCTCAATGGAGCAATGACATCAACACTCTTGGCATATTGGATTCCAAACTTGGGCCAGCTTTTGTATATCATGAAAAAATGCCCTGACACATGGAAAGGTTTCACATTCTTGGCCTTCAAAGATCTTTGTCCTGTTATCAAGCTTTCAGTCTCTTCTGGAGCTATGTTATGTCTTGAGATATGGTACAACACAGTTTTGATTCTTCTAACAGGCAACATGAAAAATGCGGAAGTTTCCATTGATGCTCTTGCCATTTGCCTCAACATCAATGGGTGGGAAATGATGGTGGCCCTTGGTTTCTTTGCTGCAGCAGGTGTTCGGGTGGCAAATGAGCTTGGAAGAGGAAGTGCAAAGGCTGCAAAATTTTCCATTCTGATTTCAGTTATCACATCATTTTTCATTGGTTTCATACTATTCTTGGTGTTCCTATTTCTGAGGGAAAAACTTGCCTACATTTTCACAACAAACCCTCATGTGGCTGAAGCAGTCGGCGATTTATCACCTTTGCTCTCAATTTCCATCTTGTTGAACAGTGTTCAACCTGTGCTCTCAGGTGTTTCTGTGGGAGCTGGGTGGCAAAGCGTTGTAGCATATGTAAACATAGGATGTTATTACCTTATTGGTATTCCTGTTGGACTGATGCTTGATAAACTTCTCCATTTGCAAGTCAAGGGTATTTGGATTGGAATGTTGTTTGGAACATTTGTTCAAACCGTGATGCTTATTACAATCACATTTAAAACTGATTGGGACAAACAGGTAGAGATAGCTCGAAATCGTGTTAACAAATGGGCAGTGGTGGAGAACCAAGAATCAAACAATAGATCAAGTGGATCTAGCTAA 1479 0.4064 MGEELKKKLLHQRNNSLVSDVGEEESLGKRAWEESKKMWVVAGPAIFTRFSTFGITVVTQSFIGHIGSTELAAYALVITVLVRFANGVLIGMASALETLCGQAYGAKRYDMLGVYLQRSWIVLFMTSILLLPIYIFTTPLLEALGQEKSIAQVAGSISLWAIGVIFSFSVSFTCQMFLQAQSKNKIIAYLAAVSISIHVLLSWLLTVKFKFGLNGAMTSTLLAYWIPNLGQLLYIMKKCPDTWKGFTFLAFKDLCPVIKLSVSSGAMLCLEIWYNTVLILLTGNMKNAEVSIDALAICLNINGWEMMVALGFFAAAGVRVANELGRGSAKAAKFSILISVITSFFIGFILFLVFLFLREKLAYIFTTNPHVAEAVGDLSPLLSISILLNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPVGLMLDKLLHLQVKGIWIGMLFGTFVQTVMLITITFKTDWDKQVEIARNRVNKWAVVENQESNNRSSGSS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00563 492 TIGRFAM matE: MATE efflux family protein 44 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g00563 492 PANTHER MULTIDRUG RESISTANCE PROTEIN 20 477 - -
Cca07g00563 492 CDD MATE_eukaryotic 34 467 IPR045069 GO:0042910|GO:1990961
Cca07g00563 492 PANTHER PROTEIN DETOXIFICATION 20 477 - -
Cca07g00563 492 Pfam MatE 266 425 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g00563 492 Pfam MatE 44 204 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00563 Cca-Chr7 8077067 8081724 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00563 K03327 - gmx:100775619 835.484