Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1258 ATGGGAGAAGAGCTAAAGAAGAACCTTTTGCAGCATCAAAACATTTTAGAGGATGAAGAAGAGCCACTAAACAAAAGGGTATGGAAAGAAAGCAAGAAGATGTGGATAGTAGCAGGTCCTGCCATATTCAATAGGTTTTCAACTTTTGGTATCCAAGTTGTTGCTCAATCTTTCATTGGTCATATTGGTTCAACTGAATTAGCTGCCTATGCCCTTGTTATGACTGTCCTAGTTAGATTTGCAAATGGAATTCTGTTGGGCATGGCAAGTGCATTGGAAACTCTATGTGGACAAGCGTATGGAGCAAAAAAATATGAAATGATGGGAGTGTATCTTCAAAGATCATGGATAGTTTTATTCATAACCTCAATTTTTCTTCTTCCAATATACATTTTTACCACCCCAATTTTAGAGGCACTTGGCCAAGATAAAATTATTGCACAAGTTGCAGGAAGCATTTCAATATGGGCAATAGGTATCATATTTTCTTTTGCAGTCTCATTCACTTGTCAAATGTTCCTACAAGCACAAAGCAAGAACAAGATTATTGCTTACCTTGCAGCTTTTTCAATTTCAATTCATGTTTTTTTGTCATGGCTTTTAACTGTTAAGTTCAAGTTTGGACTTAATGGTGCAATGACATCAATCCTTTTGGCTTATTGGATACCAAATTTGGGCCAACTTGTTTTTATCATGACAAAATGTCCTGAGACATGGAAGGGTTTCTCATTTTTGGCTTTTAAGGATCTTTGGCCTGTTATCAAGCTTTCTTTGTCTTCTGGAGTTATGTTATGTCTTGAAATATGGTACAACACAGTTTTGATTCTACTAACAGGGAACATGAAAAATGCTGAGATTGCCATTGATGCTCTCGCCATATGCCTCAACATCAATGGATGGGAAATGATGATATCTCTTGGTTTCTTTGCTGGAGCTAGTGTTAGGGTGTCAAATGAACTTGGAAGAGGGAGTTCAAAGGCAGCAAAATTTTCCATTGTGATAACAGTGCTCACATCATTTTCCATTGGATTTGTGCTATTCTTGATCTTTCTATTCCTAAGGGAAAAACTTGCATACATTTTCACCCCAAATCCAGATGTGGCTAATGCAGTTGGTGATCTATCACCTTTGTTGTCAATCTCCATACTGTTGAATAGTGTCCAACCTGTGCTCTCTGGAGTTGCTGTTGGAGCTGGTTGGCAGAGCATTGTAGCATATGTAAACATAGGCTCCTATTACCTCATTGGTATTCCTTTTGGAGTGGTGCTTGGTAATCTTCTCCATTTGCAAGTTAAGGGAATTTGGATTGGAATGTTGTTTGGAATTTTTGTTCAAACCATAATGCTAATCACAATTGCATTTAAAACTGACTGGGACAAGCAGGTTGAGATTGCTCGAAATCGTGTTAACAAATGGGCTGTAGTGGAGAATGATGAATCAAACAACACATCAAGGATATCTAGTTAA 1467 0.377 MGEELKKNLLQHQNILEDEEEPLNKRVWKESKKMWIVAGPAIFNRFSTFGIQVVAQSFIGHIGSTELAAYALVMTVLVRFANGILLGMASALETLCGQAYGAKKYEMMGVYLQRSWIVLFITSIFLLPIYIFTTPILEALGQDKIIAQVAGSISIWAIGIIFSFAVSFTCQMFLQAQSKNKIIAYLAAFSISIHVFLSWLLTVKFKFGLNGAMTSILLAYWIPNLGQLVFIMTKCPETWKGFSFLAFKDLWPVIKLSLSSGVMLCLEIWYNTVLILLTGNMKNAEIAIDALAICLNINGWEMMISLGFFAGASVRVSNELGRGSSKAAKFSIVITVLTSFSIGFVLFLIFLFLREKLAYIFTPNPDVANAVGDLSPLLSISILLNSVQPVLSGVAVGAGWQSIVAYVNIGSYYLIGIPFGVVLGNLLHLQVKGIWIGMLFGIFVQTIMLITIAFKTDWDKQVEIARNRVNKWAVVENDESNNTSRISS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1258 488 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr6g1258 488 Pfam MatE 262 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr6g1258 488 PANTHER PROTEIN DETOXIFICATION 15 474 - -
Tpr6g1258 488 TIGRFAM matE: MATE efflux family protein 40 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr6g1258 488 CDD MATE_eukaryotic 30 463 IPR045069 GO:0042910|GO:1990961
Tpr6g1258 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 15 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1258 Tpr-Chr6 12982333 12986562 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1258 K03327 - gmx:100775619 795.808