Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03592 ATGGAGGGGAATCTGAAGAAGTTGTTGCTGAGAAGAGAGAAAACATCATCAGAAGAAGAGGAATATGAAGAAGAGGAACCATCGTTGGTGAAGAGGGCGTGGATAGAGAGCAAGGTGATGTGGATAGTGGCAGCACCAGCCATCTTCACTAGATTCTCAACCTTTGGTATCAACATTATAAGCCAGGCTTTTGTTGGTCATATTGGTCCAAAAGAACTCGCTGCTTTTTCCCTTGTCTTCACTGTTCTCATACGCTTCGCCAATGGTATTCTGTTAGGAATGTCGAGTGCGATGTCAACACTTTGTGGACAAGCATATGGTGCACAAGAATATGGCATGATGGGAGTGTATCTTCAAAGATCATGCATAGTTTTATTCTCAACTGCTTTATGTCTTCTTCCACTGTTCATCTTCGCAACCCCAATTTTGACGCTCTTAGGCCAAGATGAAAGCATAACACAAGTGGCTGGAACCATTTCACAATGGTCAATTCCCGTCTTATTTGCTTATATTGTCTCATTCAATTGCCAGACATTCCTACAATCTCAAAGCAAGAATGTCATTATTGCATTCTTGGCAGCTTTCTCAATAATCATTCATGTGATCCTCTCTTGGCTATTCACAATACAGTTCAAGTTTGGGATTCCTGGTGCAATGATTTCAACAATTTTGGCATACTGGATTCCAAATATTGGTCAACTAATATTTATTACATGTGGATGGTGCCCTGAAACATGGAAAGGTTTCTCAGTTTTAGCATTCAAAGATCTTTGGCCTGTTATCAAGCTTTCCATCTCATCTGGTGCCATGCTATGTCTTGAGTTATGGTACAACACAATATTGATTCTTTTGACTGGTAACATGGAAAATGCCGAGGTTCAAATTGATGCTCTATCTATATGCATTAACATTAGCGGATGGGGACTGATGATATCATTTGGTTTCATGTCTGCAGCAAGTGTTCGTGTGGCAAATGAACTTGGAAGAGGAAGTTCCAGAGCTGCAAAGTTCTCTATAGCTGTGACAGTGCTTACATCCTTTTCTATTGGGTTTATCTTATTTGCACTTTTCTTATTTTTAAGGGAAAGAGTAGCTTATGTGTTTACTTCAAACGAAGATGTAGCTGCTGCTGTTGGAGATTTGTCACCTTTGTTGGCAGTTTCTTTATTACTAAATAGTATTCAACCAGTACTCTCAGGGGTTGCTGTTGGAGCAGGATGGCAGAGCATTGTAGCATATGTGAACATAGGGTGTTATTACTTCATTGGTATTCCAGTTGGAATAGTACTTGCTAACATTATTCACTTGCAAGTCAAGGGTATTTGGATTGGAATGTTGTTTGGGACACTAATTCAAACCATAGTCCTTATTATAATCACCTACAAAACTAATTGGGATATACAGGTAACTGTAGCTCGCAATCGTATTAATAAATGGTTTAAGGTAGACCATGATCATGAAGTAATTACATCAAATAATTAG 1482 0.3907 MEGNLKKLLLRREKTSSEEEEYEEEEPSLVKRAWIESKVMWIVAAPAIFTRFSTFGINIISQAFVGHIGPKELAAFSLVFTVLIRFANGILLGMSSAMSTLCGQAYGAQEYGMMGVYLQRSCIVLFSTALCLLPLFIFATPILTLLGQDESITQVAGTISQWSIPVLFAYIVSFNCQTFLQSQSKNVIIAFLAAFSIIIHVILSWLFTIQFKFGIPGAMISTILAYWIPNIGQLIFITCGWCPETWKGFSVLAFKDLWPVIKLSISSGAMLCLELWYNTILILLTGNMENAEVQIDALSICINISGWGLMISFGFMSAASVRVANELGRGSSRAAKFSIAVTVLTSFSIGFILFALFLFLRERVAYVFTSNEDVAAAVGDLSPLLAVSLLLNSIQPVLSGVAVGAGWQSIVAYVNIGCYYFIGIPVGIVLANIIHLQVKGIWIGMLFGTLIQTIVLIIITYKTNWDIQVTVARNRINKWFKVDHDHEVITSNN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03592 493 CDD MATE_eukaryotic 36 469 IPR045069 GO:0042910|GO:1990961
Spst1g03592 493 Pfam MatE 46 206 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst1g03592 493 Pfam MatE 269 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst1g03592 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 465 - -
Spst1g03592 493 Coils Coil 5 25 - -
Spst1g03592 493 NCBIfam MATE family efflux transporter 46 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03592 Spst-Chr1 45198785 45207009 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03592 K03327 - gmx:100789145 790.03