Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03595 ATGAACGGCACTCACTCTCGCTCCCGCCCTGAGTATTTCCCGGGTCACATTGAGGACCCGTCGTACATCCGCATCGCGGACACCACCCTCCGCGATGGCGAGCAGGCCCCCGGCGCCGCCATGACTGCCGACCAGAAGCTGCGCATCGCGCGGCAGCTGGCGAAGCTGGGAGTGGACATCATCGAGGCGGGGTTCCCCTCAGCGTCGCAGGAGGACTTCAATGCAGTGAAGATGATAGCGCAAGAAGTTGGTCGTAACTGCGATGGCGATGATGATGGGTATGTTCCTGTGATTTCCGCATTCTCCAGGTGCAATGAAAATGACATCAGATGTGCTTGGGAGGCTGTGAGGCACGCCAAGAGGCCGAGGCTTTTCACCTTCATCGCAACCAGCCCCATTCACATGGAGTACAAGCTCAGAAAGACCAAAGACGAGGTCCTTCGTATTGCTCGTGAAATGGTCAACTTTGCACGCAGTTTGGGGTGTCGTGACATCCAGTTCGGTGCTGAAGATGCAACCAGATCAGATAGAGAGTTTCTCTATGAAATATTTGGAGAAGCTATAAAAGCTGGAGCAACAACAGTGGCCATAGGTGACACTGTCGGCATAACAATGCCATTCGAGTTGGGAAAATTGGTTGCTGATATAAAAGCCAATACCCCTGGAATTCAAAATGCTGTTATTGCTGTTCACTGTCACAATGATCTTGGACATGCTACTGCAAATACAATAGAGGGTGCTCGTGCTGGTGCAAGGCAATTAGAAGTAACAATTAATGGAATTGGTGAAAGGGCTGGTAATTGTGCATTAGAAGAGGTTGTGATGGCCCTAAGATGCAGGGGAGATCATATTTTTGATGGTCTATATACTGGAATTAATACAAAGCACATATTGAAGACCAGCAAGATGGTTGAAGAGTTCTCTGGCATGCATTTACAACCACACAAAGCTCTCGTAGGTGCTAATGCCTTTCTCCATGAAAGTGGCATTCATCAGGCTGGATTGTTAAAGCATAGAAGTACATATGAAATACTTTCTCCTGAAGATATTGGTTATGAAAGGTCAAGTGGAGCTAATATGGTACTCGGGAAGCTAAGTGGACGCCAAGCTTTGAAAAATCGACTTAAAGAGCTTGGCTATGAACTGAAGGAGGATGAAGTTGAGAGTGTATTTCAAAACTTCAAAGCAATGGCTGAGAAAAAAAAGAGAGTTACTGATGCTGACCTTAAAGCATTGGTATCATCTGATAAAGTTTCTCATGTAGAACATATTTGGAAGCTTGGTGGTTTGGAGGTGACTTGTGGAACAGTGAATTTTTCATCAACAACTATCAAACTTGTTACAATTGACGGTAGCACACACGTTGCTTGTTCTGTTGGAAAAGGACCAGTGGATTCGGCTTACAAGGCTGTCGATCTCATTGTGAAGGAAGCTGTGAAAGTACTTGAGTACTCACTGAATACAGTTACAGAAGGCACTGATGCAATTGCAACTACACATGTTGTAATTCGTAGAGAGAACAAGCAGTCACCTACTTCTACTTTAAATGGAAACATTGTTTATCCAACATTTAGTGGGATTGGAGAAGGAGTGGATGTTGTTGTTTCCAGTGTAGAGGCTTATCTTAATGCACTAAACCAAATGCTTAACTTGAAGGAATGA 1662 0.4525 MNGTHSRSRPEYFPGHIEDPSYIRIADTTLRDGEQAPGAAMTADQKLRIARQLAKLGVDIIEAGFPSASQEDFNAVKMIAQEVGRNCDGDDDGYVPVISAFSRCNENDIRCAWEAVRHAKRPRLFTFIATSPIHMEYKLRKTKDEVLRIAREMVNFARSLGCRDIQFGAEDATRSDREFLYEIFGEAIKAGATTVAIGDTVGITMPFELGKLVADIKANTPGIQNAVIAVHCHNDLGHATANTIEGARAGARQLEVTINGIGERAGNCALEEVVMALRCRGDHIFDGLYTGINTKHILKTSKMVEEFSGMHLQPHKALVGANAFLHESGIHQAGLLKHRSTYEILSPEDIGYERSSGANMVLGKLSGRQALKNRLKELGYELKEDEVESVFQNFKAMAEKKKRVTDADLKALVSSDKVSHVEHIWKLGGLEVTCGTVNFSSTTIKLVTIDGSTHVACSVGKGPVDSAYKAVDLIVKEAVKVLEYSLNTVTEGTDAIATTHVVIRRENKQSPTSTLNGNIVYPTFSGIGEGVDVVVSSVEAYLNALNQMLNLKE 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03595 553 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 446 548 IPR036230 -
Spst1g03595 553 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 228 241 IPR002034 GO:0019752|GO:0046912
Spst1g03595 553 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 1. 30 46 IPR002034 GO:0019752|GO:0046912
Spst1g03595 553 FunFam 2-isopropylmalate synthase 311 427 - -
Spst1g03595 553 FunFam 2-isopropylmalate synthase 18 310 - -
Spst1g03595 553 Pfam HMGL-like 23 304 IPR000891 GO:0003824
Spst1g03595 553 SMART LeuA_dimer_2 403 549 IPR013709 GO:0003852|GO:0009098
Spst1g03595 553 Pfam LeuA allosteric (dimerisation) domain 404 548 IPR013709 GO:0003852|GO:0009098
Spst1g03595 553 SUPERFAMILY Aldolase 20 322 - -
Spst1g03595 553 CDD DRE_TIM_IPMS 25 306 - -
Spst1g03595 553 Gene3D - 312 427 - -
Spst1g03595 553 Coils Coil 368 388 - -
Spst1g03595 553 Gene3D Aldolase class I 18 309 IPR013785 -
Spst1g03595 553 Gene3D - 435 549 IPR036230 -
Spst1g03595 553 ProSiteProfiles Pyruvate carboxyltransferase domain. 23 298 IPR000891 GO:0003824
Spst1g03595 553 PANTHER HOMOCITRATE SYNTHASE-RELATED 11 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03595 Spst-Chr1 45268197 45277101 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03595 K01649 - gmx:100816439 861.677