Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03316 ATGGGAGAAGAGGAAAAGGAGAAGCTTTTGCTTTTGCATGAGCTAAAGAAGAATTGTTCGGAAGAGGAAGAGGAAGAGTCAGTGGGGAAAAGGGTATGGGAAGAAAGCAAGAAGATGTGGGTGGTAGCAGGCCCTGCCATATTCACAAGGTTTTCAACTTTTGGGATTGTGGTTGTTACTCAATCCTTCATTGGCCATATTGGTTCAACTGAACTAGCTGCATATGCTCTTGTTATGACTGTTCTAGTCAGGTTTGCAAATGGGGTATTGATTGGCATGGCAAGTGCTTTGGAAACTCTTTGTGGTCAAGCATATGGAGCCAAAAAGTATGACATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTGTTGTTCACAGCCTCTATATTCCTTCTTCCAATTTACATCTTCACCACCCCTTTGTTGGAGGCTCTAGGCCAAGACAAAACCATTGCTCAAGTTGCTGGAAGCATTTCTCTCTGGTCAATTGGTATCATATTTTCTTTCACTGTCTCATTCACCTGCCAAATGTTCCTGCAATCACAAAGCAAGAACAAGATCATCGCCTACCTTGCAGCAGTTTCAATTTCATTGCACGTTTTCCTGTCATGGCTTCTTACTGTTCAGTTCAAGTTTGGGCTCAACGGTGCACTCACATCGACACTTCTGGCATATTGGATTCCAAACTTTGGCCAGCTTGTGTTTATCATGACCAAGTGCCCTGACACATGGAAAGGTTTCTCATTCTTGGCCTTCAAAGATCTTTGGTCTGTTATCAAGCTTTCTCTCTCTTCTGGGGTTATGTTATGTCTCGAGATCTGGTACAACACAGTTTTGCTTCTTCTTACAGGCAACATGAAAAATGCAGAAGTTTCCATTGATGCTCTGGCCATATGTCTCAACATCAGTGGATGGGAAATGATGATAGCTCTTGGTTTCTTTGCTGCTGCAGGTGTTAGGGTTGCAAACGAGCTTGGAAGAGGGAGTTCAAAGGGTGCAAAATTTTCCATTCTGATAACAGTTCTGACATCATTTGTGATTGGATTCGTTCTATTTTTGATGTTTCTGTTTCTGCGGGAAAGACTTGCTTATATTTTCACCACAGACCCTGAGGTAGCTAAAGCAGTTGGTGATTTATCACCATTGCTCTCATTTTCCATCTTGATGAACAGTGTTCAACCTGATGGTAAAATGTGGATTATTCTATGCACTTGTAATGTTATTATGAATATAGGAGTTTCTGTTGGAGCTGGGTGGCAAAGCATTGTTGCATATGTAAACATTGCGTGTTATTATCTTATTGGTATTCCTGTTGGAGTGCTTCTTGATCACTTTTTCCATTTGGATGTCAAGGGTATTTGGATTGGAATGTTGTTTGGAACATTTGTTCAGACCGTGATGCTTATTACGATCACATTGAAAACAAACTGGGACAAGCAGGTAGAGATAGCTCGAAATCGTGTTAATAAATGGACATTGGTGGAGAACGAAGAACCAAACACCAGACCAACCATATCTAGCTAA 1524 0.4127 MGEEEKEKLLLLHELKKNCSEEEEEESVGKRVWEESKKMWVVAGPAIFTRFSTFGIVVVTQSFIGHIGSTELAAYALVMTVLVRFANGVLIGMASALETLCGQAYGAKKYDMLGVYLQRSWIVLFTASIFLLPIYIFTTPLLEALGQDKTIAQVAGSISLWSIGIIFSFTVSFTCQMFLQSQSKNKIIAYLAAVSISLHVFLSWLLTVQFKFGLNGALTSTLLAYWIPNFGQLVFIMTKCPDTWKGFSFLAFKDLWSVIKLSLSSGVMLCLEIWYNTVLLLLTGNMKNAEVSIDALAICLNISGWEMMIALGFFAAAGVRVANELGRGSSKGAKFSILITVLTSFVIGFVLFLMFLFLRERLAYIFTTDPEVAKAVGDLSPLLSFSILMNSVQPDGKMWIILCTCNVIMNIGVSVGAGWQSIVAYVNIACYYLIGIPVGVLLDHFFHLDVKGIWIGMLFGTFVQTVMLITITLKTNWDKQVEIARNRVNKWTLVENEEPNTRPTISS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03316 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 477 - -
Vimu6g03316 507 CDD MATE_eukaryotic 35 482 IPR045069 GO:0042910|GO:1990961
Vimu6g03316 507 Pfam MatE 267 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu6g03316 507 Pfam MatE 45 205 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu6g03316 507 NCBIfam MATE family efflux transporter 45 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03316 Vimu-Chr6 29723630 29726447 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03316 K03327 - gmx:100775619 803.512