Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00559 ATGGAGGGAGTTCTAAAGCAGAAATTGCTTAGCAAAGAGAAAATATCagaagaagaagaagaagaaaatgaaTTATCATTGGTGAAGAGGGTGTGGAAAGAGAGCAAGATGGTGTGGACAGTGGCAGTCCCAGCCACATTCACTAGGTTCTCCACCTTTGGTATCAGTGTTATAAGCCAAGCCTTTGTTGGTCACATTGGCTCAGTGGAACTTGCTGGTTTTGCTCTTGTAGTCACTGTCCTTTTACGCTTTGCCCTTGGTATTCTGTTAGGAATGAGCAGTGCGTTGTCAACACTTTGTGGACAAGCATACGGTGCAAAAGAATATGGCATGATGGGAGTGTATCTTCAAAGATCATGGGTAGTTTTATTCTTAACTACACTCTGTTTTGTTCCTGTGTTCATCTTCACAAGCCCAATTTTGAAGATCCTAGGCCAAGAAGATAGCATAGCACAAATGGCTGGAACCTTTTCTCTTTGGTTAATTCCTGTCTTGTTCTCTTTTTTCATCTCATTCACATGCCAAACTTTCTTGCAATCTCAAAGTAGGAATGTCATTATTTCATTCTTGGCATCTTTCTCAATGATTTTTCATGTATTCCTTTCTTGGCTATTGACAATGAAACTTAAGCTTGGGATTCCTGGTGTAATGACTTCATCAATTTTGGCATACTGGATTCCCAATATTGGCCAAATAATATTTATTACATGTGGTTGGTGCCCAAAAACATGGCATGGTTTCTCAATTTTAGCATTCAAAGATCTTTGGTCTGTTGCTAAACTTTCCCTCTCATCTGGTGTCATGTTATGTCTTGAACTCTGGTACAACACGATATTAGTTCTTTTGACGGGCAACATGAAAAATGCCGAGGTCGAAATTGATGCTCTATCAATATGCCTTAACATCGTTGGATGGGCAATAATGATATCACTTGGTTTCTTGTCTGCTGCAAGTGTTCGAGTGGCAAACGAGCTTGGAAGAGGAAACTCCAAAGCTGCAAAGTTCTCTACAATTGTGACGGTGCTTACCTCCTTCGCCATTGGATTTATTCTATTTTTATTCTTTTTATTTTTTAGGGAAAAACTTTCTTCCATATTTACCTCAAATAAGGACGTGGCCAATGTTATTGGGGACATGTCGCCTATGTTGACAATCTCTCTTCTACTAAACAGTGTCCAACCTGTACTTTCAGGAGTTGCTATTGGAGCAGGGTGGCAAAGCATTGCAGCCTATGTGAACATAGGGTGTTATTACATCATAGGTGTTCCAATAGGGGTTGTGCTTGGTTATGTTTTGCATTGGCAAGTCAAGGGTATTTGGATCGGAATGTTGTTTGGAACATTTATTCAAACAATAGTGCTAAGTATAATCACGTACAAAACTAATTGGGACAAGCAGGTTACTATAGCTCAAAATCGTATTAAAAAGTGGTCAAAGATGGACTCTGGTGATGAAACAATTACATTAGATAATTAG 1476 0.3869 MEGVLKQKLLSKEKISEEEEEENELSLVKRVWKESKMVWTVAVPATFTRFSTFGISVISQAFVGHIGSVELAGFALVVTVLLRFALGILLGMSSALSTLCGQAYGAKEYGMMGVYLQRSWVVLFLTTLCFVPVFIFTSPILKILGQEDSIAQMAGTFSLWLIPVLFSFFISFTCQTFLQSQSRNVIISFLASFSMIFHVFLSWLLTMKLKLGIPGVMTSSILAYWIPNIGQIIFITCGWCPKTWHGFSILAFKDLWSVAKLSLSSGVMLCLELWYNTILVLLTGNMKNAEVEIDALSICLNIVGWAIMISLGFLSAASVRVANELGRGNSKAAKFSTIVTVLTSFAIGFILFLFFLFFREKLSSIFTSNKDVANVIGDMSPMLTISLLLNSVQPVLSGVAIGAGWQSIAAYVNIGCYYIIGVPIGVVLGYVLHWQVKGIWIGMLFGTFIQTIVLSIITYKTNWDKQVTIAQNRIKKWSKMDSGDETITLDN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00559 491 Pfam MatE 44 204 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g00559 491 Pfam MatE 267 426 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g00559 491 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 478 - -
Cca07g00559 491 CDD MATE_eukaryotic 34 467 IPR045069 GO:0042910|GO:1990961
Cca07g00559 491 PANTHER PROTEIN DETOXIFICATION 16 478 - -
Cca07g00559 491 TIGRFAM matE: MATE efflux family protein 44 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00559 Cca-Chr7 7961348 7965801 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00559 K03327 - gmx:100792122 743.421