Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1503 ATGGGGGAGCAACAGAAGGAGAAGCTTTTGGTGCAGCAAAACAATTCAGAGGAGAGTGTTGAAGAGGAAGAGTCACTAAGGAAAAGGGCATGGAAAGAAAGCAAGAAGATGTGGATGGTAGCAGGCCCGGCCATATTCACAAGGTTTTCAACCTTTGGAATACTTGTAGTTAGTCAATCCTTCATTGGACATATTGGCTCTACTGAACTAGCTGCCTATGCCCTTGTCCAAACAGTCCTAGTCCGGTTTGCAAATGGTGTATTGCTGGGCATGGCAAGTGCACTGGAAACTCTATGTGGGCAAGCATATGGGGCCAAAAGATATGACATGCTTGGAGTGTATCTTCAAAGATCATGGATAGTCTTGTTCTTAACCTCAATCTTTCTTCTTCCTATTTATATTTTCACAACCCCAATTTTAGAGGCTCTAGGCCAGGACAAAAAAATTGCTCAAGTTGCTGGAAGCATTTCTCTCTGGGCAATAGGTATCATCTTTGCTTTATCTGTGTCATTCACTTGCCAAATGTTCCTACAAGCACAGAGCAAGAACAAGATCATTGCCTACCTAGCAGCAATTTCAATTTCAATTCACCTTTTTCTGTCATGGCTTCTAACTGTGAAGTTCAAGTTTGGGCTCAATGGGGCAATGACATCGACACTTTTGGCATATTGGATACCAAATTTTGGGCAGCTTGTGTTTATCATGACTAAGTGCCCTGACACATGGATGGGTTTCTCATTTTTGGCCTTCAAAGATCTCTGGCCTGTTATCAAGCTTTCCTTGTCTTCTGGAGCTATGTTATGTCTTGAGATCTGGTACAACACAGTTTTAATTCTTCTAACAGGGAACATGAAAAATGCTGAGGTTTCCATTGATGCTCTGGCCATATGCCTCAACATTAATGGGTGGGAGATGATGATAGCCCTTGGTTTCTTTGCAGCTGCTGGTGTCCGAGTTTCAAATGAGCTTGGAAGAGGGGATTCAAAGGCTGCAAAATTTTCCATTATAATAACAGTTCTCACATCATTTTCCATTGGTTTGGTCTTATTCTTTGTGTTTCTGTTTTTGAGGGAAAGACTTGCTTATGTTTTCACTCTAGACTCAGAGGTAGCTGAAGCAGTTGGGGATTTATCACCTTTATTGTCAATCTCCATATTGTTGAACAGTGTCCAACCTGTTCTCTCTGGGGTTTCTGTTGGAGCTGGATGGCAAAGCGTTGTAGCATATGTAAACATAGGCTGTTATTACCTCATTGGTATTCCGGTTGGAGTGGTGCTGGGTAACCTTATCCATTTGCAAGTAAAGGGTGTTTGGATTGGAATGTTGTTTGGAACATTTGTTCAAACCGTAATGCTAATTACAATCACACTTAAAACAGATTGGGAAAATCAGGTAGTGATAGCTCGAAATCGTGTTAACAAATGGGCTGTCAAGGAGAACACAGAGCCAAATAGTGGATCACCCATTTCTAGTTAA 1476 0.416 MGEQQKEKLLVQQNNSEESVEEEESLRKRAWKESKKMWMVAGPAIFTRFSTFGILVVSQSFIGHIGSTELAAYALVQTVLVRFANGVLLGMASALETLCGQAYGAKRYDMLGVYLQRSWIVLFLTSIFLLPIYIFTTPILEALGQDKKIAQVAGSISLWAIGIIFALSVSFTCQMFLQAQSKNKIIAYLAAISISIHLFLSWLLTVKFKFGLNGAMTSTLLAYWIPNFGQLVFIMTKCPDTWMGFSFLAFKDLWPVIKLSLSSGAMLCLEIWYNTVLILLTGNMKNAEVSIDALAICLNINGWEMMIALGFFAAAGVRVSNELGRGDSKAAKFSIIITVLTSFSIGLVLFFVFLFLRERLAYVFTLDSEVAEAVGDLSPLLSISILLNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPVGVVLGNLIHLQVKGVWIGMLFGTFVQTVMLITITLKTDWENQVVIARNRVNKWAVKENTEPNSGSPISS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1503 491 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 477 - -
Lja1g1503 491 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g1503 491 Pfam MatE 265 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g1503 491 Pfam MatE 43 203 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g1503 491 TIGRFAM matE: MATE efflux family protein 43 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g1503 491 CDD MATE_eukaryotic 33 465 IPR045069 GO:0042910|GO:1990961
Lja1g1503 491 PANTHER PROTEIN DETOXIFICATION 18 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1503 Lja-Chr1 16246713 16251627 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1503 K03327 - gmx:100775619 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1503 1 16246713 16251627 Lja1g1503 1 16246713 16251627 ECH