Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1684 ATGATAGCACAGGAAGTTGGCAATAGTTGCGACGCCGATGGGTATGTCCCGGTCATTATGGCCATGTGTAGGTGCAATGAGAAGGACATTACGACTGCGTGGGAGGCTGTGAAGTACGCTAGGAGGCCAAGGCTTTTGCCTTTCATAGCAACCAGTCCCATTCACATGGAGTATAAGCTCAAAAAGAGTAAAGAAGTGGTGCTTCAAATAGCTCGCGATATGGTCAAGTTTGCACGGAGTTTAGGGTGTCGGGTCATCAGCCAGGAAGAAGTTATCAAAGCTGGGGCAACAACTGTGGTCATAGCTGACACTGTGGGCATAACAATGCCATTCGAGTTTGGAAAATTGATTGCTGATATACAAGCCAATACCCCTGGTGTGGAAAATGCTATTATTTCTGTTCACTGTCATAATGATCTTGGACATGCTACTGCAAACACAATAGAGGCTGCCCGTGCTGGTGCAAGGCAATTAGAAGTAACAATTAATGGAATTGGTGAAAGGGCTGGTAATGCCTCATTAGAAGAGgtTGTGATGGCTCTAAAATGCAGGGGGGATCATGTCTTAGGTGGTCTGTATACTGGAATTAATACAAAGCACATATTGAAGACAAGCAAgatgGCTGGAATGTTAAAGCATAGAGGTACATATGAAATAATATCTCCTGAAGATATTGGTCATGAAAGGTCCATTGGAGCTAATATTATACTAGGGAAGCTAAGTTATTCTCTACCTTTTCAGCTTGGTTATGAACTTAGGGATGATGAAGTTGAGAGTGTCTTTCGAAACTTCGAAGCAATGGCCGAGAAAAAGAAgAGAGTTACTGATGTTGACCTCAAAGCATTGGTATCAAATGAGATTTCTCATGCAAAACCTATTTGGAAGCTAAGTGGTTTGCAGGTGACTTGTGGAACTATGGGTTTTTCAACAGCAACTATTAAACTTGTTACTATTGACGGTAGCACACACGTTGCTTGTTCCGTTGCTACAGGACCAGTGGATTCAGCTTACAAGGCTATCGATCTCATTGTGAAGGAAGTTGTAAAAGTACTTGAGTACTCAGTGATTACAGTTATAAAAGGCACTTATGCAATTGCAACTACACATGTTGTAATTTGCAAAGAGAACAACCAATCACCTACTTTTGCTTTGGATGGAAGCATTGTTTATCCAACATTTCGtGGGACTGGAGAAGGAGTGGATGTTATTGTTTCTAGTGTAGAGGCTTATCTTATTGCACTAAACAAAATGCTCAATTTCAAGGAATGA 1269 0.4121 MIAQEVGNSCDADGYVPVIMAMCRCNEKDITTAWEAVKYARRPRLLPFIATSPIHMEYKLKKSKEVVLQIARDMVKFARSLGCRVISQEEVIKAGATTVVIADTVGITMPFEFGKLIADIQANTPGVENAIISVHCHNDLGHATANTIEAARAGARQLEVTINGIGERAGNASLEEVVMALKCRGDHVLGGLYTGINTKHILKTSKMAGMLKHRGTYEIISPEDIGHERSIGANIILGKLSYSLPFQLGYELRDDEVESVFRNFEAMAEKKKRVTDVDLKALVSNEISHAKPIWKLSGLQVTCGTMGFSTATIKLVTIDGSTHVACSVATGPVDSAYKAIDLIVKEVVKVLEYSVITVIKGTYAIATTHVVICKENNQSPTFALDGSIVYPTFRGTGEGVDVIVSSVEAYLIALNKMLNFKE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1684 422 PANTHER HOMOCITRATE SYNTHASE-RELATED 209 421 - -
Ssu4g1684 422 SMART LeuA_dimer_2 273 418 IPR013709 GO:0003852|GO:0009098
Ssu4g1684 422 SUPERFAMILY Aldolase 18 208 - -
Ssu4g1684 422 PANTHER HOMOCITRATE SYNTHASE-RELATED 1 208 - -
Ssu4g1684 422 Gene3D - 210 297 - -
Ssu4g1684 422 ProSiteProfiles Pyruvate carboxyltransferase domain. 1 202 IPR000891 GO:0003824
Ssu4g1684 422 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 132 145 IPR002034 GO:0019752|GO:0046912
Ssu4g1684 422 Pfam LeuA allosteric (dimerisation) domain 274 418 IPR013709 GO:0003852|GO:0009098
Ssu4g1684 422 Gene3D - 301 418 IPR036230 -
Ssu4g1684 422 PANTHER 2-ISOPROPYLMALATE SYNTHASE 1, CHLOROPLASTIC 209 421 - -
Ssu4g1684 422 PANTHER 2-ISOPROPYLMALATE SYNTHASE 1, CHLOROPLASTIC 1 208 - -
Ssu4g1684 422 Gene3D Aldolase class I 3 86 IPR013785 -
Ssu4g1684 422 Gene3D Aldolase class I 87 209 IPR013785 -
Ssu4g1684 422 Pfam HMGL-like 19 84 IPR000891 GO:0003824
Ssu4g1684 422 Pfam HMGL-like 89 207 IPR000891 GO:0003824
Ssu4g1684 422 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 316 417 IPR036230 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1684 Ssu-Chr4 29598833 29615331 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1684 K01649 - gmx:100776166 647.121