Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1683 ATGGCCAGTGCATTGTCAACACTTTGTGGACAAGCATACGGTGCAAAAGAATATGGCATGATGGGAGTGTATCTTCAGAGATCATGGATAGTTTTATCCTTAACTGCACTCTGTCTTCTTCCGGTGTTCATCTTCACAAGCCCAATTTTGATGATCTTAGGCCAAGAAGAAAGCATAGCAAATGTGGCAGGAACCATTTCTCTTTGGTCAATTCCTGTCCTGTTTGCTTTTATCGTTTCGTTCACTTGCCAGATGTTCCTGCAATCTCAAAGCAAGAACATCATTATTGCATTCTTGGCAGCTTTCTCAATAATTATTCATGTGTTCCTCTCTTGGCTATTGACAACGAAATTCAAGCTCGAGATTCCTGGTGCAATGACTTCAACAAGTTTGGCATACTGGATTCCCAATATTGGTcaactaatatttattacatgtgGTTGGTGCCCTGAAACATGGAAAGGTTTCTCGTTTTTAGCATTCGAAGATCTTTGGCCTGTTGTCAAGCTTTCCCTTTCATCTGGTGCCATGTTATGTCTTGAGCTTTGGTACAACACAATATTGGTTCTTTTAACGGGCAACATGAAAAATGCAGAGGTCCAAATTGATGCTCTATCTATATGcCTCAACATCAACGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCTGCAAGTGTTCGAGTGGCAAACGAGCTTGGAAAAGGAAGCTCCAAAGCTGCAAAGTTCTCTATAGTTGTGACAGTGCTTACATCTTTCGCCATTGGATTcattctcttcttatttttcttattttttcgaGAAAGACTTGCTTACATATTTACCTCAAATAAAGATGTAGCCAATGCTGTTGGGGATTTGTCACCTTTGTTGGCAATCTCTATACTACTAAACAGTGTCCAACCTGTACTCTCAGGAGTTGCTATTGGAGCAGGGTGGCAAAGCATTGTAGCATATGTGAACATAGGGTGTTATTACATCATAGGTATTCCGGTAGGGGTTGTGCTTGGTAACGTTATCAATTGGCAAGTCAAGGTCGGTACTCTTCTCATTCTCAACTTCCATTTGATTGGTGTTTCCTCTATTggacaaaatttcttttttcttttgcaggGCATCTGGATTGGAATGTTGTTTGGAACATTTATTCAAACTGTAGTGCTAATTATAATCACCTACAAAACTAATTGGGACGAGCAGGTAACTATAGCTCGTAATCGTATTAAAAAGTGGTCGAAGGGGGACTCTGATCATGAAACAATTACCTCAGATAATTAG 1281 0.3817 MASALSTLCGQAYGAKEYGMMGVYLQRSWIVLSLTALCLLPVFIFTSPILMILGQEESIANVAGTISLWSIPVLFAFIVSFTCQMFLQSQSKNIIIAFLAAFSIIIHVFLSWLLTTKFKLEIPGAMTSTSLAYWIPNIGQLIFITCGWCPETWKGFSFLAFEDLWPVVKLSLSSGAMLCLELWYNTILVLLTGNMKNAEVQIDALSICLNINGWEMMISLGFMAAASVRVANELGKGSSKAAKFSIVVTVLTSFAIGFILFLFFLFFRERLAYIFTSNKDVANAVGDLSPLLAISILLNSVQPVLSGVAIGAGWQSIVAYVNIGCYYIIGIPVGVVLGNVINWQVKVGTLLILNFHLIGVSSIGQNFFFLLQGIWIGMLFGTFIQTVVLIIITYKTNWDEQVTIARNRIKKWSKGDSDHETITSDN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1683 426 PANTHER PROTEIN DETOXIFICATION 363 413 - -
Ssu4g1683 426 PANTHER PROTEIN DETOXIFICATION 1 347 - -
Ssu4g1683 426 Pfam MatE 176 335 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu4g1683 426 Pfam MatE 1 113 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu4g1683 426 TIGRFAM matE: MATE efflux family protein 1 344 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu4g1683 426 CDD MATE_eukaryotic 1 402 IPR045069 GO:0042910|GO:1990961
Ssu4g1683 426 PANTHER MULTIDRUG RESISTANCE PROTEIN 363 413 - -
Ssu4g1683 426 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1683 Ssu-Chr4 29554274 29556430 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1683 K03327 - gmx:100797962 682.559