Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1500 ATGGAAGGAGATTCTAAGCTGCAGAAGCTGCTGACTGGAGTGAAAACAGCAAAGGATGCTGAAGAAGAGGAGTTATCATTGGTGAAGAGGGTGTGGAATGAGAGCAAAGTGATGTGGATTGTGGCAGGTCCAGCTATTTTCACAAGATTCTCCACTTTTGGTATCAATGTTATTAGTCAAGCATTTGTTGGTCATATTGGATCAAGGGAACTTGCTGCTTTTGCTCTTGTTTTCACTGTTCTCATCAGATTTGCTAATGGTGTTCTGTTAGGAATGGCCGGTGCATTGGCAACACTCTGTGGACAAGCATATGGTGCAAAAGAGTATGGCATGATGGGAGTGTATCTTCAAAGATCATGGATAGTTTCATTTTTAGTTGCACTCGTTCTTCTTCCGGTCTTCATCTTCACGACCCCAATTCTGACCCTCCTAGGCCAAGAAGAAAGCATAGCGCAAGTGGCTGGAACCATTTCCCTCTTGATGATTCCTGTCATGTTTTCTTTCATTGTCTCTTTCACTTGCCAGCAATTCCTGCAATCTCAAAGCAAGAACAACATCATCGCGTTCATGGCAGCTTTCTCATTAACTATTCATGTGATCCTCTCTTGGCTTTTGACAATAAAATATAAGTTTGGGATTGTTGGTGCTTTATCCTCAACAAGTTTAGCATTCTGGATTCCCAACATTGGTCAACTTATTTTTGTCACTTGTGGTTGGTGCCCTGAAACATGGAAAGGTTTCTCATTTTTAGCATTCAAAGATCTTTGGCCTATTTTCAAGCTCTCTCTTTCATCCGGTGCCATGTTAGCGCTTGAGCTATGGTACAACACAATTTTGGTTCTATTAACAGGCAACATGGAAAATGCAGAGGTTGAAATTGATGCTCTATCCATATGTCTCAACATCAATGGATGGGAAATGATGATATCTCTTGGTTTCCTGGCTGCAGCAAGTGTTAGAGTGGCAAATGAGCTTGGAAAAGGAAGCTCCAAATCTGCAAAGTTCTCTGTAGCTGTATCAGTGCTAACATCCTTCACCATTGGCTTCGTTCTCTTCTTATTCTTCTTGTTTTTTAGAGAAAAACTTGCTTATATATTCACCAAAAATCAAGATGTGGTCAATGCTGTTGGGGACTTGTCACCTTTGTTGGCAGTTTCTATACTTCTTAACAGTGTCCAACCAGTGCTCTCAGGTGTTGCTCTGGGAGCAGGGTGGCAAAGCACTGTAGCATATGTGAACTTAGGGTGTTACTACATCATAGGTCTTCCTGTAGGAATTGTTCTTGGTAATGTTTTCCATTGGCAAGTCAAGGGTATCTGGATTGGAATGTTGTTTGGAACACTTGTTCAAACCATAGTGTTAGTCATAATCACTTACAGAACTGATTGGGAGGAGCAGGTAACTATAGCTCGTAATCGAGTTAACAGGTGGTCTAAGGTGGAACCTGATCATATATCAGATAATTAG 1467 0.4131 MEGDSKLQKLLTGVKTAKDAEEEELSLVKRVWNESKVMWIVAGPAIFTRFSTFGINVISQAFVGHIGSRELAAFALVFTVLIRFANGVLLGMAGALATLCGQAYGAKEYGMMGVYLQRSWIVSFLVALVLLPVFIFTTPILTLLGQEESIAQVAGTISLLMIPVMFSFIVSFTCQQFLQSQSKNNIIAFMAAFSLTIHVILSWLLTIKYKFGIVGALSSTSLAFWIPNIGQLIFVTCGWCPETWKGFSFLAFKDLWPIFKLSLSSGAMLALELWYNTILVLLTGNMENAEVEIDALSICLNINGWEMMISLGFLAAASVRVANELGKGSSKSAKFSVAVSVLTSFTIGFVLFLFFLFFREKLAYIFTKNQDVVNAVGDLSPLLAVSILLNSVQPVLSGVALGAGWQSTVAYVNLGCYYIIGLPVGIVLGNVFHWQVKGIWIGMLFGTLVQTIVLVIITYRTDWEEQVTIARNRVNRWSKVEPDHISDN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1500 488 Pfam MatE 268 426 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g1500 488 Pfam MatE 44 204 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja1g1500 488 PANTHER PROTEIN DETOXIFICATION 16 477 - -
Lja1g1500 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 477 - -
Lja1g1500 488 CDD MATE_eukaryotic 34 467 IPR045069 GO:0042910|GO:1990961
Lja1g1500 488 TIGRFAM matE: MATE efflux family protein 44 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1500 Lja-Chr1 16200621 16205166 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1500 K03327 - gmx:100792122 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1500 1 16200621 16205166 Lja1g1500 1 16200621 16205166 ECH