Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02115 ATGGAAAGAGATCTAAACCAAAAGCTACTGAGAAAACCAGAAGTAGAAAACGAAGAAGAAGAGACACTTGGCAAAAGGGTATGGAATGAAACAAAGCTTATGTGGGTAGTTGCAGCACCAGCCATATTCACAAGATTCTCAACTTTTGGTATTCAAGTTATTACCCAAGCTTTTGTTGGTCATATTGGTTCCAAAGAACTCGCTGCTTTTGCTCTTGTTTTCACCGTTCTCATTAGGTTCGCCAATGGTATTCTGTTGGGAATGGCGAGCGCGTTGGCGACGCTTTGTGGACAAGCCTATGGTGCAAAAGAATATGGAATGATGGGGGTGTATCTTCAAAGATCTTGGCTAGTTTTATTCTTAACTGCACTGATTCTTCTTCCTGTGTTCTTCCTCACATCTCCAATTTTGGTCCTCTTAGGTCAAGATGAAAGCATAGCAGAAGTTGCAGGAACCGTTTCTCTATGGTCAATTCCTGTTATGTTTGCTTTCATTGTCTCATTCACTTGTCAAACATTCCTTCAATCACAAAGCAAGAACACCATCATTGCGTTCTTGGCTGCATTTTCCATCATCATCCATGCTTTCCTCTCTTGGCTTTTGACAATGAAATACAATTTCGGTATCGCTGGTGCCATGATTTCGACTAGTTTGGCTTACTGGATTCCCAACATTGGTCAGCTTATCTTTGTTACATGTGGTTGGTGTCCTGAAACTTGGAAAGGTTTCTCATTTTTAGCATTCCAAGACCTTTGGCCTGTTGTCAAACTTTCCCTTTCCTCCGGTGCCATGTTGTGTCTTGAGCTTTGGTACAACACTATATTGGTTCTTTTGACAGGAAACATGAAAAACGCTGAGGTTCAAATCGATGCACTATCTATATGTCTCAACATCAATGGATGGGAAATGATGATATCACTCGGTTTCATGGCTGCAGCAAGCGTTCGAGTATCGAATGAGCTTGGTAAAGGAAGCGCGAAAGCCGCAAAATTCTCGATCATTGTGTCGGTGCTTACATCGTTGGCCATTGGATCCTGTCTGTTTTTGTTTTTCTTATTTTTTAGAGAAAGACTTGCTTATATATTTACCTCGGATAAAGAGGTGGCTGCAGCGGTTGGAGATTTATCGCCATTGTTATCGATCTCTATTCTGTTAAACAGTGTTCAACCGGTACTCTCAGGAGTGGCCGTTGGAGCAGGGTGGCAAAGCATTGTAGCATATGTGAACATAGGATGTTATTACATCATAGGAATTCCTGTTGGAATTATTCTTGGTAATGTTATCCATTGGCAAGTCAAGGGAATTTGGATGGGAATGTTGTTTGGAACATTGATTCAAACTATAGTGCTAGTTATAATCACATATAAAACTAATTGGGACGAGCAGGTCATTCTAGCTCAGAACCGTGTAAGCCGATGGTCCAAGGTAAAGAGTACTAATCATGATCAAGAAGAAGAAAGAAAATTAATTGGAAAATAG 1479 0.407 MERDLNQKLLRKPEVENEEEETLGKRVWNETKLMWVVAAPAIFTRFSTFGIQVITQAFVGHIGSKELAAFALVFTVLIRFANGILLGMASALATLCGQAYGAKEYGMMGVYLQRSWLVLFLTALILLPVFFLTSPILVLLGQDESIAEVAGTVSLWSIPVMFAFIVSFTCQTFLQSQSKNTIIAFLAAFSIIIHAFLSWLLTMKYNFGIAGAMISTSLAYWIPNIGQLIFVTCGWCPETWKGFSFLAFQDLWPVVKLSLSSGAMLCLELWYNTILVLLTGNMKNAEVQIDALSICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIIVSVLTSLAIGSCLFLFFLFFRERLAYIFTSDKEVAAAVGDLSPLLSISILLNSVQPVLSGVAVGAGWQSIVAYVNIGCYYIIGIPVGIILGNVIHWQVKGIWMGMLFGTLIQTIVLVIITYKTNWDEQVILAQNRVSRWSKVKSTNHDQEEERKLIGK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02115 492 CDD MATE_eukaryotic 30 463 IPR045069 GO:0042910|GO:1990961
Vifa5g02115 492 NCBIfam MATE family efflux transporter 40 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa5g02115 492 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 459 - -
Vifa5g02115 492 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa5g02115 492 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02115 Vifa-Chr5 700320901 700323323 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02115 K03327 - gmx:100792122 818.92