Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03311 ATGAACAACGGCACTCGCTCTCGTTCCCGGCCGGAGTATATCCCGGGCCATATTCCGGACCCTTGCTACATCCGTATATTAGACACCACCCTCCGAGACGGCGAGCAGGCCCCCGGCGCCGCCATGACAGCAGAGCAGAAGCTGAGGATAGCGCGGCAGCTGGCGAAGCTGGGCGTGGACGTGATCGAGGCGGGGTTCCCTTCTGCATCACAGGAGGACTTCAACGCCGTAAAGATGATAGCGGAGGAAGTTGGGAAGAAATGCAACGATGATGAGTACGTTCCGGTGATTGTTGTGATATGCAGGTGCAATGAGAAGGACATTAGGACTGCATGGGAGGCTGTGAAGGAGGCGAAGAGGCCGAGGCTTATGCCCTTCATCGCCACCAGCCCCATTCACATGGAATCGGATAGAGAGTTTCTTTACGAAATATTTGGAGATGTTATAAAAGCTGGGGCAACAACACTGGGCGTAGGAGACACTGTGGGCATAACAATGCCTTTGGAGTTTGGAAAACTGATTGCTGACATAAAAGCCAATACCCCTGGAATTGAAAATGCTATTATTTCTGCTCACTGTCATAATGATCTTGGACATGCTACTGCAAACACAATAGAGGCTGCCCGTGCTGGTGCAAGACAACTAGAAGTAACAATTAATGGAATTGGTGAAAGGGCTGGTAATGCTGCATTTGAAGAGGTTGAAGAGTTCTCTGGTATGCATTTACAGCCACACAAAGCTATAGTAGGTGATAATGCATTTCTACATGAAAGTGGCATTCATCAGGATGGATTGTTAAAGCACAGAGGTACATATGAAATACTTTCTCCTGAAGATATTGGTTATGAAAGGTCCAGTGGAGCTAATATGGTACTCGGCAAGCTAAGGGAGGATGAAATTGAGAGTGTATTTAGAAACTTCAAAGCAATGGCTGAAAAAACAAAGAGAGTTACTGATGTTGACCTTAAAGCATTGGTATCAGATAAAGTTTCTGATGTAGAACCTATTTGGAAACTTGGTGGGTTGCAGGTGACATGTGGAACTCTGAATTTTTCAACAAGTGTCAAACTTGTTTCAATTGACAGTAGCACACATGTTGCTTGTTCTGTTGGAAAAGGACCAGTGGATTCAGCTTACAAGGCTGTCGATCTCATTGTCAAGGAAGGTGTGAAAGTAGTTGAGTACTCTCTAAATACAGTGACTGAAGGCACCGATGCAATTGCAACTGTACATGTTGTAGTTCGAAAAGAGAACATGAACTCACATAAATCTACTTTAACTGAAAACATTATCTATCCAACATTTAGTGGGATTGGAAAAGGAGTAGATGTTGTTGTTTCCAGTGTAGAGGCTTATCTTACTGCACTAAACAAAATGCTCCATTTCAAGGAATGA 1395 0.4459 MNNGTRSRSRPEYIPGHIPDPCYIRILDTTLRDGEQAPGAAMTAEQKLRIARQLAKLGVDVIEAGFPSASQEDFNAVKMIAEEVGKKCNDDEYVPVIVVICRCNEKDIRTAWEAVKEAKRPRLMPFIATSPIHMESDREFLYEIFGDVIKAGATTLGVGDTVGITMPLEFGKLIADIKANTPGIENAIISAHCHNDLGHATANTIEAARAGARQLEVTINGIGERAGNAAFEEVEEFSGMHLQPHKAIVGDNAFLHESGIHQDGLLKHRGTYEILSPEDIGYERSSGANMVLGKLREDEIESVFRNFKAMAEKTKRVTDVDLKALVSDKVSDVEPIWKLGGLQVTCGTLNFSTSVKLVSIDSSTHVACSVGKGPVDSAYKAVDLIVKEGVKVVEYSLNTVTEGTDAIATVHVVVRKENMNSHKSTLTENIIYPTFSGIGKGVDVVVSSVEAYLTALNKMLHFKE 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03311 464 Gene3D - 243 340 - -
Vimu6g03311 464 Gene3D Aldolase class I 136 242 IPR013785 -
Vimu6g03311 464 Pfam HMGL-like 136 234 IPR000891 GO:0003824
Vimu6g03311 464 Gene3D Aldolase class I 14 135 IPR013785 -
Vimu6g03311 464 PANTHER HOMOCITRATE SYNTHASE-RELATED 12 135 - -
Vimu6g03311 464 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 358 459 IPR036230 -
Vimu6g03311 464 Gene3D - 348 460 IPR036230 -
Vimu6g03311 464 SUPERFAMILY Aldolase 23 252 - -
Vimu6g03311 464 Pfam LeuA allosteric (dimerisation) domain 317 460 IPR013709 GO:0003852|GO:0009098
Vimu6g03311 464 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 1. 31 47 IPR002034 GO:0019752|GO:0046912
Vimu6g03311 464 ProSiteProfiles Pyruvate carboxyltransferase domain. 24 266 IPR000891 GO:0003824
Vimu6g03311 464 SMART LeuA_dimer_2 316 460 IPR013709 GO:0003852|GO:0009098
Vimu6g03311 464 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 189 202 IPR002034 GO:0019752|GO:0046912
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03311 Vimu-Chr6 29647673 29655677 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03311 K01649 - gmx:100797422 687.952