Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0564 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g02377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0879 . . . . . . . . . . . . . . . . . . .
Vvi4g0565 Acco10g1981 . Accr4g00808 . Adu08g02558 . Aed4g1778 . . Aev08g2580 . Ahy18g2725 . Aip08g03109 Alju08g0816 . . Amo18g3460 . . Arst8g03536 . . . Bisa09g1176 . Bva10g00396 Bva06g02376 Car05g02939 . Cca03g01590 . Dere04g0538 . . Dod09g0871 Enph1g1369 . Glsi08g1613 . . . . Gma06g00589 . . . . . Lal4g0211 . . . . . . . . . . Lapu9g01906 . . . Lele01g0653 Lele02g0640 Lele03g0652 Lele04g0659 . . . . Lja1g3897 . Mal2g0907 . . . . . Mibi05g0743 . Mtr3g3891 . Phac9g00351 . . . . . Psa5g0694 . . . . Pte1g02388 . . Pumo10g00097 . Pvu9g0940 . Rops10g01388 . Seca4g01017 . . . Ssu1g3475 . Sto5g0880 Sto9g3323 Tpr7g0660 . . . Tsu07g00671 . Vian4g01988 . Vifa2g03972 . . . Viun9g03103 . Vivi3g01405 . Vra5g1223 .
Vvi4g0566 . . . . . . . . . Aev08g0550 . Ahy20g2079 . Aip10g02445 . . . Amo20g2693 . . . . . . . . . . . . . . . . . Dod09g1862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0567 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0568 . . . . . . . . . Aev08g0551 . Ahy20g2077 . Aip10g02441 . . . Amo20g2689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0569 . . . . . . . . . . . Ahy20g2076 . Aip10g02439 . . . Amo20g2678 . . . . . . . . . . . . . . . . . Dod09g1861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0570 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal8g1573 Lal10g0036 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0573 . . . . . . . . . Aev08g0552 . Ahy20g2074 . Aip10g02436 . . . Amo20g2674 . . . . . . . . . . . . . . . . . Dod09g1859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0564 Chr4 5217811 5232786 -
Bva Bva06g02377 Chr06 15319804 15325950 +
Sto Sto5g0879 Chr5 5871338 5872610 -
Vvi Vvi4g0565 Chr4 5241128 5245845 +
Acco Acco10g1981 Chr10 32462306 32465343 -
Accr Accr4g00808 Chr4 7656198 7659266 +
Adu Adu08g02558 Chr08 41655956 41662952 +
Aed Aed4g1778 Chr4 22080262 22085514 -
Aev Aev08g2580 Chr08 24424048 24428496 -
Ahy Ahy18g2725 Chr18 130696289 130703704 +
Aip Aip08g03109 Chr08 121131769 121138641 +
Alju Alju08g0816 Chr08 6160868 6163918 +
Amo Amo18g3460 Chr18 137706922 137713952 +
Arst Arst8g03536 Chr8 46028642 46035830 +
Bisa Bisa09g1176 Chr09 17019610 17024877 -
Bva Bva10g00396 Chr10 4339223 4344683 +
Bva Bva06g02376 Chr06 15314186 15318710 -
Car Car05g02939 Chr05 74362340 74368141 -
Cca Cca03g01590 Chr03 34697524 34704737 +
Dere Dere04g0538 Chr04 5430917 5433964 -
Dod Dod09g0871 Chr09 28301559 28307720 -
Enph Enph1g1369 Chr1 39279165 39282133 -
Glsi Glsi08g1613 Chr08 11495680 11499545 +
Gma Gma06g00589 Chr06 5324834 5330066 -
Lal Lal4g0211 Chr4 1311229 1315898 -
Lapu Lapu9g01906 Chr9 33863205 33871293 +
Lele Lele01g0653 Chr01 3821234 3824028 +
Lele Lele02g0640 Chr02 3833514 3836114 +
Lele Lele03g0652 Chr03 3826537 3829315 +
Lele Lele04g0659 Chr04 3983505 3987184 +
Lja Lja1g3897 Chr1 49171760 49177547 +
Mal Mal2g0907 Chr2 10509818 10515052 +
Mibi Mibi05g0743 Chr05 6993178 6997431 +
Mtr Mtr3g3891 Chr3 52742333 52748415 -
Phac Phac9g00351 Chr9 2280723 2292037 -
Psa Psa5g0694 Chr5 56480066 56483909 -
Pte Pte1g02388 Chr1 44574170 44576972 +
Pumo Pumo10g00097 Chr10 1651431 1663184 +
Pvu Pvu9g0940 Chr9 14180140 14185656 -
Rops Rops10g01388 Chr10 26825115 26832499 -
Seca Seca4g01017 Chr4 16283381 16290237 +
Ssu Ssu1g3475 Chr1 89046443 89053908 +
Sto Sto5g0880 Chr5 5874645 5880651 +
Sto Sto9g3323 Chr9 33192298 33195096 +
Tpr Tpr7g0660 Chr7 5812533 5817188 +
Tsu Tsu07g00671 Chr07 5352157 5356604 +
Vian Vian4g01988 Chr4 36540446 36544069 +
Vifa Vifa2g03972 Chr2 1167892259 1167895170 +
Viun Viun9g03103 Chr9 38559481 38566208 +
Vivi Vivi3g01405 Chr3 22914377 22918137 -
Vra Vra5g1223 Chr5 18624161 18632024 +
Vvi Vvi4g0566 Chr4 5247592 5248818 -
Aev Aev08g0550 Chr08 3103029 3104721 -
Ahy Ahy20g2079 Chr20 117517205 117519430 +
Aip Aip10g02445 Chr10 110186707 110188925 +
Amo Amo20g2693 Chr20 124568038 124570415 +
Dod Dod09g1862 Chr09 40261955 40264273 +
Vvi Vvi4g0567 Chr4 5266032 5267827 -
Vvi Vvi4g0568 Chr4 5291969 5293312 -
Aev Aev08g0551 Chr08 3117066 3118409 -
Ahy Ahy20g2077 Chr20 117406806 117408733 +
Aip Aip10g02441 Chr10 110087616 110089774 +
Amo Amo20g2689 Chr20 124450122 124452476 +
Vvi Vvi4g0569 Chr4 5305332 5339420 +
Ahy Ahy20g2076 Chr20 117301701 117308341 -
Aip Aip10g02439 Chr10 109995583 110002203 -
Amo Amo20g2678 Chr20 124225765 124232465 +
Dod Dod09g1861 Chr09 40218188 40225628 -
Vvi Vvi4g0570 Chr4 5352256 5355396 -
Vvi Vvi4g0571 Chr4 5373067 5390453 -
Lal Lal8g1573 Chr8 20044235 20053079 +
Lal Lal10g0036 Chr10 403651 413144 +
Vvi Vvi4g0572 Chr4 5399596 5403551 -
Vvi Vvi4g0573 Chr4 5409357 5415994 +
Aev Aev08g0552 Chr08 3126826 3134713 +
Ahy Ahy20g2074 Chr20 117154341 117157047 -
Aip Aip10g02436 Chr10 109843921 109846627 -
Amo Amo20g2674 Chr20 124061933 124064642 +
Dod Dod09g1859 Chr09 40204032 40207123 -
Acco Acco10g1981 Chr10 32462306 32465343 -
Accr Accr4g00808 Chr4 7656198 7659266 +
Adu Adu08g02558 Chr08 41655956 41662952 +
Alju Alju08g0816 Chr08 6160868 6163918 +
Arst Arst8g03536 Chr8 46028642 46035830 +
Bisa Bisa09g1176 Chr09 17019610 17024877 -
Dere Dere04g0538 Chr04 5430917 5433964 -
Enph Enph1g1369 Chr1 39279165 39282133 -
Glsi Glsi08g1613 Chr08 11495680 11499545 +
Lapu Lapu9g01906 Chr9 33863205 33871293 +
Lele Lele01g0653 Chr01 3821234 3824028 +
Lele Lele02g0640 Chr02 3833514 3836114 +
Lele Lele03g0652 Chr03 3826537 3829315 +
Lele Lele04g0659 Chr04 3983505 3987184 +
Mibi Mibi05g0743 Chr05 6993178 6997431 +
Phac Phac9g00351 Chr9 2280723 2292037 -
Pte Pte1g02388 Chr1 44574170 44576972 +
Pumo Pumo10g00097 Chr10 1651431 1663184 +
Pvu Pvu9g0940 Chr9 14180140 14185656 -
Rops Rops10g01388 Chr10 26825115 26832499 -
Seca Seca4g01017 Chr4 16283381 16290237 +
Vian Vian4g01988 Chr4 36540446 36544069 +
Vifa Vifa2g03972 Chr2 1167892259 1167895170 +
Viun Viun9g03103 Chr9 38559481 38566208 +
Vivi Vivi3g01405 Chr3 22914377 22918137 -