Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0565 ATGGAGTTGGAAATGCAGTGGGATGGAAACCCAAATATTGTACTTGATATTAAGACGAGAGTGGGTGTGGGACTACCTGTACAGGTAAAAAACATTGGATTCACTGGGGTTTTCCGGTTAATTTTCAAACCAATGGTTGAAGAGTTTCCGTGTTTTGGAGCTGTTTGTTATTCCTTGAGAGAAAAGAAAAACCTGGATTTTAAACTTAAAGTTGTTGGTGGTGATATAACAGCACTCCCAGGGATTTCTGATGCTATTGAGGAAACAATACTAGATGCTATTGAAGATTCTATAACATGGCCTGTTCGAAAAATTGTCCCCATAATACCTGGAGATTACAGTGACCTGGAGTTGAAGCCTGTTGGAACATTAGAGGTGAAGCTTGTGCAAGCCAGGGACTTAACAAATAAAGACCTGATTGGGAAATCTGATCCCTATGCTGTGTTATTTGTTCGTCCAATACGTGACAGAATGAAAACAAGCAAAACAATAAATAACGAACTGAATCCAATTTGGAATGAGCATTTCGAGTTCATAGTAGAAGATGCATCGACCCAACACTTGACAGTAAGAATTTTTGATGATGAAGGTGTTCAAGCTTCTGAACTCATTGGTTGTGCTCAAGTGCGGTTAAAGGACCTTGAGCCTGGTAAGGTGAAGGATGTCTGGTTGAAACTGGTCAAAGATTTGGATGTCCAAAGAGATAAGAAATACAGGGGGGAGGTCCGCTTGGAGCTATTGTACTGTCCTTTTGGCATGGAGAGTGTATTTACAAATCCATTCAGGCCCAATTTATTGACCTCCTTAGAGAAAGTCCTTAAAGCGGATGGAACAGAGGCTGATGATATTAAAAAATCACACTCGCTCAAGAAAAGGGATATTATTGTGAGGGGAGTCCTCTCTGTGACAGTAATATCTGCAGAAAACTTACCAGTTGTAGACCTAATAGGAAAGGCCGATCCCTATGTCGAGCTTACAATGAAGAAATCCAATACAAAACACAGAACTAGGGTTGTAAATAACAGCCTGAATCCAATTTGGAATCAAACATTTGACTTTGTTGTGGAAGATGGGTTACATGATATGTTAATTCTGGACGTCTGGGATCATGACACTTTTGGGAAGGATAAAATTGGGAGATGCATCTTCACGCTCACTAGAGTCATATTAGAAGGGGAGTTCAGAGATAACTTTCCCCTCGAAGGGGCTAAGTCAGGAAGCCTGAATTTACATCTCAAGTGGAGCCCCCAGCCAATATTCCGGGATACTTGA 1272 0.4088 MELEMQWDGNPNIVLDIKTRVGVGLPVQVKNIGFTGVFRLIFKPMVEEFPCFGAVCYSLREKKNLDFKLKVVGGDITALPGISDAIEETILDAIEDSITWPVRKIVPIIPGDYSDLELKPVGTLEVKLVQARDLTNKDLIGKSDPYAVLFVRPIRDRMKTSKTINNELNPIWNEHFEFIVEDASTQHLTVRIFDDEGVQASELIGCAQVRLKDLEPGKVKDVWLKLVKDLDVQRDKKYRGEVRLELLYCPFGMESVFTNPFRPNLLTSLEKVLKADGTEADDIKKSHSLKKRDIIVRGVLSVTVISAENLPVVDLIGKADPYVELTMKKSNTKHRTRVVNNSLNPIWNQTFDFVVEDGLHDMLILDVWDHDTFGKDKIGRCIFTLTRVILEGEFRDNFPLEGAKSGSLNLHLKWSPQPIFRDT* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0565 423 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 295 417 IPR035892 -
Vvi4g0565 423 ProSiteProfiles C2 domain profile. 279 398 IPR000008 -
Vvi4g0565 423 SMART C2_3c 299 397 IPR000008 -
Vvi4g0565 423 SMART C2_3c 123 223 IPR000008 -
Vvi4g0565 423 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 120 252 IPR035892 -
Vvi4g0565 423 FunFam Plant synaptotagmin 117 259 - -
Vvi4g0565 423 CDD SMP_SYT 1 108 - -
Vvi4g0565 423 CDD C2 124 226 - -
Vvi4g0565 423 FunFam Extended synaptotagmin-2 278 418 - -
Vvi4g0565 423 CDD C2 300 396 - -
Vvi4g0565 423 Gene3D C2 domain 280 416 IPR035892 -
Vvi4g0565 423 Gene3D C2 domain 115 250 IPR035892 -
Vvi4g0565 423 Pfam C2 domain 122 226 IPR000008 -
Vvi4g0565 423 Pfam C2 domain 298 396 IPR000008 -
Vvi4g0565 423 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 414 IPR045050 GO:0008289
Vvi4g0565 423 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 109 IPR031468 GO:0008289
Vvi4g0565 423 ProSiteProfiles C2 domain profile. 103 224 IPR000008 -
Vvi4g0565 423 PRINTS C2 domain signature 315 327 IPR000008 -
Vvi4g0565 423 PRINTS C2 domain signature 363 371 IPR000008 -
Vvi4g0565 423 PRINTS C2 domain signature 341 354 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0565 Vvi-Chr4 5241128 5245845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0565 300 388 Lipid Metabolism Gene Families AT1G51570 39.326 1.41e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0565 - - vri:117912419 842.417