Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01388 ATGGGATTCATCAGTGGCTTGATCGTTGGGATCGCCATCGGTATCGGATTGATCATCGCTTTCGCTCGTCACGAAAGTTACCGATCCAAGCGTCGCTCCGAGTTGGCGAAGACGATAACAGAGTTTGCGAGGATGACCGTGGAAGATTCTAGAAAAATTCTGTCCCCTAAGTTCTATCCATCATGGGTGGTTTTCACTCGGAGACAGAAGTTGAGTTCAACTTGTTCCTTTCTTTTAAATTGGCTTAATAGCCAACTCCACAAGATTTGGCCGTATGTTAATGAGGCAGCGTCAGAGTTAATAAGAAGCAATGTTGAACCCATTCTTGAACAATATAAGCCGATTATTTTGTCTTCTCTCAAATTCTCCAAGTTGACCCTTGGTACTGTGGCTCCACAATTTACAGGAGTTTCAATTGTTGATGAGGATAGTGGACCTAATGGAGTGACCATGGAGCTAGAGATGCAATGGGATGGTAACCCAAATATTGTTCTTGACATTAAAACCAGAGTTGGTGTCGTACTTCCTGTACAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCACACCACTAGTAGATGAGTTCCCTGCTTTTGGAGCTGTTTGTTTTTCCTTGAGAGAAAAGAAAGATCTGGATTTTACTCTTAAGGTTGTTGGTGGTGATATAACATCTTTACCGGGGATATCGGATGCCATAGAGGAAACAATTCGAGATGCCATTGAAGACTCCATAACTTGGCCAGTACGCACAATTATACCAATTATACCTGGGGATTACAGTAACCTGGAATTGAAACCGGTTGGAACACTAGAAGTAAAATTAGTGCAAGCAAAGAATTTAACAAATAAAGATTTGATTGGGAAATCCGATCCTTATGCTGTTATATTTGTACGCCCGCTACGTGACAGAACCAAAACCAGTAAAACAATCAACAACCAGTTGAATCCAGTATGGAATGAGCACTTTGAGTTCATTGTTGAAGATGCGTCAACGCAGCACTTGACCATAAGAATTTTTGATGATGAAGGCATTCAGGCTGCTGAGCTCATTGGTTGTGCCCAAGTTTCGCTGAAGGAACTTGAACCTGGTAAAGTCAAGGATGTGTGGTTGAAACTGGTTAAGGATTTGGAGGTCCATAGAGATAACAAATACAGGGGCGAGGTGCACTTGGAGCTCTTGTACTGCCCATTTGGAGTTGGTAGCAGCATTAAGAACCCTTTTGACCCTGATTACTCATTAACCACGTTCGAGAAGACCCTCAAGAGTGATGACCCAGGGGCTGAGGATCCAACAAAATCACCATCAAGGAGGAGAAGCAACGTGATTGTAAGAGGAGTTCTATCTGTGACCGTGATTTCAGCTGAAGACTTGCCAATAGTGGACTTGATGGGAAAGGCTGACCCATTTGTTGTCCTTATGTTGAAAAAATCAGAAAAAAAATTCAAGACGAGGGTTGTAAACGAATCCCTAAACCCAGTTTGGAATCAAACGTTTGACTTTGTCGTGGAGGATGGCTTACACGAAATGTTAATTATCGAAGTCTGGGATCATGATACATTTGGCAAGGAAAAAATGGGAAGAGTGATCTTGACACTAACTAAGGTCATCTTAGAAGGGGAATATGACGAAACTTTTCCCCTGGATGGAGCTAAATCCGGAAAGATTACTTTGCATCTAAGGTGGACTCCACAGCACAAGTATCGGGATCCTTAG 1725 0.4232 MGFISGLIVGIAIGIGLIIAFARHESYRSKRRSELAKTITEFARMTVEDSRKILSPKFYPSWVVFTRRQKLSSTCSFLLNWLNSQLHKIWPYVNEAASELIRSNVEPILEQYKPIILSSLKFSKLTLGTVAPQFTGVSIVDEDSGPNGVTMELEMQWDGNPNIVLDIKTRVGVVLPVQVKNIGFTGVFRLIFTPLVDEFPAFGAVCFSLREKKDLDFTLKVVGGDITSLPGISDAIEETIRDAIEDSITWPVRTIIPIIPGDYSNLELKPVGTLEVKLVQAKNLTNKDLIGKSDPYAVIFVRPLRDRTKTSKTINNQLNPVWNEHFEFIVEDASTQHLTIRIFDDEGIQAAELIGCAQVSLKELEPGKVKDVWLKLVKDLEVHRDNKYRGEVHLELLYCPFGVGSSIKNPFDPDYSLTTFEKTLKSDDPGAEDPTKSPSRRRSNVIVRGVLSVTVISAEDLPIVDLMGKADPFVVLMLKKSEKKFKTRVVNESLNPVWNQTFDFVVEDGLHEMLIIEVWDHDTFGKEKMGRVILTLTKVILEGEYDETFPLDGAKSGKITLHLRWTPQHKYRDP* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01388 574 ProSiteProfiles C2 domain profile. 430 549 IPR000008 -
Rops10g01388 574 CDD C2 274 376 - -
Rops10g01388 574 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 565 IPR045050 GO:0008289
Rops10g01388 574 CDD SMP_SYT 60 258 - -
Rops10g01388 574 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 445 568 IPR035892 -
Rops10g01388 574 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 80 258 IPR039010 -
Rops10g01388 574 ProSiteProfiles C2 domain profile. 253 374 IPR000008 -
Rops10g01388 574 Pfam C2 domain 272 376 IPR000008 -
Rops10g01388 574 Pfam C2 domain 449 551 IPR000008 -
Rops10g01388 574 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 270 401 IPR035892 -
Rops10g01388 574 PRINTS C2 domain signature 514 522 IPR000008 -
Rops10g01388 574 PRINTS C2 domain signature 466 478 IPR000008 -
Rops10g01388 574 PRINTS C2 domain signature 492 505 IPR000008 -
Rops10g01388 574 FunFam Plant synaptotagmin 267 409 - -
Rops10g01388 574 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 75 259 IPR031468 GO:0008289
Rops10g01388 574 SMART C2_3c 273 373 IPR000008 -
Rops10g01388 574 SMART C2_3c 450 548 IPR000008 -
Rops10g01388 574 CDD C2 451 551 - -
Rops10g01388 574 FunFam Extended synaptotagmin-2 431 569 - -
Rops10g01388 574 Gene3D C2 domain 446 572 IPR035892 -
Rops10g01388 574 Gene3D C2 domain 268 403 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01388 Rops-Chr10 26825115 26832499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01388 451 539 Lipid Metabolism Gene Families AT1G51570 33.708 8.30e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01388 - - gmx:100787972 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01388 10 26825115 26832499 Rops10g01388 10 26825115 26832499 ECH